Protein Info for Sama_2247 in Shewanella amazonensis SB2B

Annotation: capsular polysaccharide synthesis protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 188 transmembrane" amino acids 12 to 36 (25 residues), see Phobius details PF02397: Bac_transf" amino acids 7 to 182 (176 residues), 191.9 bits, see alignment E=3.8e-61

Best Hits

KEGG orthology group: None (inferred from 100% identity to saz:Sama_2247)

Predicted SEED Role

"Undecaprenyl-phosphate galactosephosphotransferase (EC 2.7.8.6)" (EC 2.7.8.6)

MetaCyc Pathways

Isozymes

No predicted isozymes

Use Curated BLAST to search for 2.7.8.6

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A1S7U6 at UniProt or InterPro

Protein Sequence (188 amino acids)

>Sama_2247 capsular polysaccharide synthesis protein (RefSeq) (Shewanella amazonensis SB2B)
MYSKIIKRIFDLFIVLFATVFLFPLLIAVCFLIKVFDPGPIIFKQKRIGRNAKEFDFYKF
RSMPVNTGDIPSDKLGSIDITWVGRLIRRTNLDELPQLFNVLKGDMSIVGPRPPIVSQRQ
LVELRKQNGAIACRPGLTGLAQVSAFDGMTVEQKAAFDAEYARKVSFLTDVKIILRTFTY
LLKPPPVY