Protein Info for Sama_2108 in Shewanella amazonensis SB2B

Annotation: hypothetical protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 229 transmembrane" amino acids 12 to 34 (23 residues), see Phobius details amino acids 53 to 76 (24 residues), see Phobius details amino acids 80 to 108 (29 residues), see Phobius details amino acids 114 to 133 (20 residues), see Phobius details amino acids 140 to 164 (25 residues), see Phobius details amino acids 187 to 212 (26 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 100% identity to saz:Sama_2108)

Predicted SEED Role

"Arginine/ornithine antiporter ArcD" in subsystem Arginine Deiminase Pathway or Arginine and Ornithine Degradation or Polyamine Metabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A1S7F7 at UniProt or InterPro

Protein Sequence (229 amino acids)

>Sama_2108 hypothetical protein (RefSeq) (Shewanella amazonensis SB2B)
MTEFWHNLWVSIDWHFTFADGVAIVLLLIWLWIIWPKDDLIGLLANKERQLRALLSLSAI
MGLWLFNAGVHGLLQLHFLGLVTLMLMFSWRLASVLALLPCAFYCLVVLKQPWLFGAYAL
MGVCLPLYLAFVIHNRGFYWLPNNVFVLIFVAGFFNAGVSQVSHEGFWSLWLWASDMQPA
EVLWQDYLSLSVLMVFPEALLNGMAVTLLVVYRPQWLSDYSDRYYLWRK