Protein Info for Sama_2078 in Shewanella amazonensis SB2B

Annotation: sensor histidine kinase/response regulator (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1141 transmembrane" amino acids 6 to 25 (20 residues), see Phobius details amino acids 37 to 56 (20 residues), see Phobius details amino acids 66 to 86 (21 residues), see Phobius details amino acids 115 to 135 (21 residues), see Phobius details amino acids 155 to 174 (20 residues), see Phobius details amino acids 186 to 213 (28 residues), see Phobius details amino acids 238 to 254 (17 residues), see Phobius details amino acids 275 to 298 (24 residues), see Phobius details amino acids 321 to 353 (33 residues), see Phobius details amino acids 375 to 397 (23 residues), see Phobius details amino acids 404 to 426 (23 residues), see Phobius details amino acids 434 to 452 (19 residues), see Phobius details amino acids 479 to 498 (20 residues), see Phobius details PF12860: PAS_7" amino acids 627 to 740 (114 residues), 151.9 bits, see alignment E=1.5e-48 PF00512: HisKA" amino acids 781 to 847 (67 residues), 39.5 bits, see alignment 9.4e-14 PF02518: HATPase_c" amino acids 892 to 1001 (110 residues), 76.4 bits, see alignment E=4.7e-25 PF00072: Response_reg" amino acids 1024 to 1136 (113 residues), 37.9 bits, see alignment E=3.6e-13

Best Hits

KEGG orthology group: None (inferred from 100% identity to saz:Sama_2078)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A1S7C7 at UniProt or InterPro

Protein Sequence (1141 amino acids)

>Sama_2078 sensor histidine kinase/response regulator (RefSeq) (Shewanella amazonensis SB2B)
MNLTLFVAVIAVFYVFLLFLLAWGAERWFSGVTKKLQIWIYGLSLAVYCSSWSFLGTVGQ
SAGDLWSFLPIFLGPILIFTFGFGMLRKMVVVSKAQNITSVADFIAARYGKSQGLAALVT
LIALFGIMPYIALQLKAMVASLNLFQEAGQPLDGMSVALIISVVLAVFAILFGTRKLDAT
EHNPGMMLAIAFESLVKLAAFLLVGLVISFGVFDGFSDIWQQADEAGIIQHPKLRLEAIL
PDLVVGIAAFLCMPRQFHVMVVECAGEGVLRRGRWIFPVYIALFGLFVAPLALAGKLLLG
DSVPADSYVINLPLALNADGLAIVALLGTLSAATGMVIVAVVTISIMISNEWLVPLMLRS
GRIRKKNFAQFSQFLLNARRLAIVIILGIGYLSFLYLADSDSLAHLGMLAFGAFAQLAPA
LVGGLYWKHGNRAGVFLGLAAGFGLWVWILLQGAGERVASAGLSDVWLLSYISPNVSDTL
LAIMVNSVFYVLGSIWFRAGVVERIQASSFVSPGELKTAGNRRTGPISQQDLLILVSRFV
SPTRAYESFSRFSPEAVNRDSWNKAASPELIAHTEHLLSGVLGASSAALVLDSVIAGRDL
ALDEVLSLVDEASSKVILSQEMLRGAIEHAYEGISVVDKDLNLVAWNARYGELYQYPDNF
LQPGMPISEVIRFNAARGYCGVGDIEEQVERRVQHMRNGTPHTSERERSDGKVIKIQGNP
MPDGGFVMTFTDITQYRAQERALKESNETLESRVKERTYELAMLNSQLLEAKAQEEMANA
SKSRFLAAVGHDLMQPLNAARLFTASLSQYSNLDDEARTTLSHVNSSLKIAGELLTDLLD
ISKLDSGMVEVNRRDFAVSDILSGLAVEFDAMGKDNQIRFAMVSSSVTINSDPALLRRVL
QNFLTNAYRYARGGRVLLGCRHRPGELEIQVLDTGCGIDERELHEIFKEFKRLSNPHSKG
VSGLGLGLAIADRISKVLGHDIKVASVLGRGSVFSISVPLGKTVTAPVPTRRPTVLQPLA
GVKVLCIDNEEAILAGLESLLRRWQCEVICARDLGDARIKLGLKGLAPDIVLADYHLDDG
QNGVDAMDGIRALYGEHLPGILITANTRKDLVEDVQRRGYHYMAKMVKPAALRALISSLV
K