Protein Info for Sama_1989 in Shewanella amazonensis SB2B

Annotation: ribonuclease E (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1141 transmembrane" amino acids 141 to 156 (16 residues), see Phobius details TIGR00757: ribonuclease, Rne/Rng family" amino acids 40 to 451 (412 residues), 562.5 bits, see alignment E=2.8e-173 PF00575: S1" amino acids 63 to 144 (82 residues), 47.7 bits, see alignment 2.6e-16 PF10150: RNase_E_G" amino acids 148 to 417 (270 residues), 335.9 bits, see alignment E=2.9e-104 PF20833: RNase_E_G_Thio" amino acids 429 to 513 (85 residues), 110.9 bits, see alignment 3.9e-36

Best Hits

KEGG orthology group: K08300, ribonuclease E [EC: 3.1.26.12] (inferred from 97% identity to saz:Sama_1989)

Predicted SEED Role

"Ribonuclease E (EC 3.1.26.12)" in subsystem RNA processing and degradation, bacterial or Ribosome biogenesis bacterial (EC 3.1.26.12)

MetaCyc Pathways

Isozymes

No predicted isozymes

Use Curated BLAST to search for 3.1.26.12

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A1S738 at UniProt or InterPro

Protein Sequence (1141 amino acids)

>Sama_1989 ribonuclease E (RefSeq) (Shewanella amazonensis SB2B)
MRHSNLRSGPECTDFSPVTHLKKNDVTMKRMLINATQSEELRVALVDGQQLYDLDIESPG
HEQKKANIYKGKITRVEPSLEAAFVDYGAERHGFLPLKEIAREYFPKGYSFQGRPNIKEV
VSEGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKE
AMADLEVPNGMGLIVRTAGVGKDAAELQWDLKVLLRHWDAIKEASESGPGPMLIHQESNV
IVRAIRDYLRRDVGEILIDHPKIFEQAKQHIATVRPDFVERVKQYKAEVPLFTHYQIESQ
IESAFQREVRLPSGGSIVIDPTEAMTSIDINSARATKGGDIEETALNTNLEAADEIARQL
RLRDLGGLIVIDFIDMTPVRHQREVENRLRDAVHQDRARVQLGRISRFGLMEMSRQRLRP
SLEESAAHICPRCHGQGTIRGTESLALSILRLMEEEAIKDNTSQVEAIVPVDVAAFLLNE
KRKAIRIIEQRHEVEVYVIPDPHMMTPEYKVIRHRQDDEIEEASYKRVEKPEAKLYEPRK
LERAQAPEPVLKGFSAPLESPPAAAPKVEAKPVKAASEVKPGFFSRLFAAIGSLFGGDNT
ETEEKKAPARNGRQQNTRGRNRRNDNRRDDGRQEGRSADSRRDDSRREDGDKRRSSDSRR
GRNKPEQADDKQLRDKSDKPRDERPKRERAPKREKPETVEAADDAVEPKQEAVRERRQRR
NMRRKVRLDDGAAQENLDAVNAQESTEDTAAESTQVVAKDKSDEKQTRSRRQPRKPKVEE
KAAETEQDVTDAANSSDAAVATTDVVAAPVVEAVSEVGTAATDMLDSDAQAADDAQDDTD
GEDKPRRDGRDGQRRSRRSPRHLRAAGQRRRRDEQEQQTGAEGGELAQAELDLPQADVDA
AGAPAAAPQDVVAKDTAASEVVTQESVLEKAEETADVVIVNDTPKAEAPVAGAVVADTAA
EVVVEVAPAAAVVDTPVAAVEAPVAETAAPVVEDAVVEAPVVETAAQAPAVAVESNAVET
KAEEAKAAEPKAAEPKAAEKVTSTAPMAKPAAVMPARVKPVEKPVADVAADIAPTKATAA
PARPAGSRFGSMVSSEMTKPSIEAREQVATPKGREYEAASTDASSAKVQSSNSAGSDMAR
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