Protein Info for Sama_1784 in Shewanella amazonensis SB2B

Annotation: inner membrane transport protein YdhC (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 433 transmembrane" amino acids 12 to 33 (22 residues), see Phobius details amino acids 47 to 68 (22 residues), see Phobius details amino acids 80 to 97 (18 residues), see Phobius details amino acids 103 to 126 (24 residues), see Phobius details amino acids 138 to 160 (23 residues), see Phobius details amino acids 166 to 188 (23 residues), see Phobius details amino acids 215 to 235 (21 residues), see Phobius details amino acids 241 to 263 (23 residues), see Phobius details amino acids 276 to 295 (20 residues), see Phobius details amino acids 301 to 322 (22 residues), see Phobius details amino acids 343 to 360 (18 residues), see Phobius details amino acids 366 to 384 (19 residues), see Phobius details TIGR00710: drug resistance transporter, Bcr/CflA subfamily" amino acids 14 to 382 (369 residues), 275.9 bits, see alignment E=3.7e-86 PF07690: MFS_1" amino acids 18 to 352 (335 residues), 132.8 bits, see alignment E=1.5e-42 PF00083: Sugar_tr" amino acids 38 to 121 (84 residues), 33.7 bits, see alignment E=2.1e-12

Best Hits

KEGG orthology group: None (inferred from 100% identity to saz:Sama_1784)

Predicted SEED Role

"Multidrug resistance transporter, Bcr/CflA family" in subsystem Copper homeostasis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A1S6I3 at UniProt or InterPro

Protein Sequence (433 amino acids)

>Sama_1784 inner membrane transport protein YdhC (RefSeq) (Shewanella amazonensis SB2B)
MISNSLTKRRSLVFFPYLALLSMLGFLATDMYLPAFNQIESSLNTSASLVAMTLTCFLGG
LAIGQLAYGSLCDKFGKRNTLMAGLGVFAVSSILLGFTENISVFFVLRVIQAFGACSAAV
IWQALVMEKFDEGEARKVFSSIMPLVALSPALAPLMGAWVSEQFGWRAIFIILAIVGLLL
AAMTPALAKESRTRSQSEPILVKNILKNRAFQNNVAIFGACSAAFFCYLTLWPAVMQHHG
YAAAEIGLSFIPQTLAFMLGGFACKKALHSHSPEAIKNMLITGFVVLSLVLFLLTQLGAG
ILAVLWVFAALAAINGAVYPLLVTDALAPFSNNATKAAGWQNFLQLGMAFIASAAVALIA
HWFEKAIGTGILVCAAIVLVAWWRMNWSTWRGSWCFPDPARMGVLRTEKREHSDNDTKTH
GVCNVSSQQKDTD