Protein Info for Sama_1752 in Shewanella amazonensis SB2B

Annotation: hypothetical protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 530 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF03572: Peptidase_S41" amino acids 255 to 404 (150 residues), 55.5 bits, see alignment E=5.3e-19

Best Hits

KEGG orthology group: None (inferred from 100% identity to saz:Sama_1752)

Predicted SEED Role

"Carboxyl-terminal protease"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A1S6F1 at UniProt or InterPro

Protein Sequence (530 amino acids)

>Sama_1752 hypothetical protein (RefSeq) (Shewanella amazonensis SB2B)
MLYLRKSSVAIALMLTLGACSGGGGDSSSGDNGSGGNNGGTTGDITWVQGTFADAGVYKN
FCANPRSGTSDKTGTALHEKMWLRSWTNETYLWYSEVPDNDPNNYTTAAYFDQLKTTQKT
ASGANKDRFHGSMSTEEWEALSNSGESLGYGVEFQLLKASPPRQIVAAYTEPGSQAANAG
ILRGAEFLEANGVDVVYSNDVDALNAAFFPTEKGKASTFKIRDVNGEEKTVSLTANTVTQ
VPVQNVKAITTTSGKVGYLQFNSHIATAEGALVSAIDTLKAQGVTDLVLDVRYNGGGLLA
IASQLGYMIAGPSRTSNKIFENTTFNDKHTSTNPVTGQALVPMPFINTGVGFSYSQGQAL
PYLGLGRVFVLTTAATCSASEAIINGLRGIDLDVVQIGNRTCGKPYGFYPTDNCGTTYFS
IQFRGENDKGFGDYADGFEPRNSPVLSGEPVNGCNMADDFTKQLGDPAEAMLAAALQYRL
DGSCPAAAVAQYAPSRGTQETVAGEALSDGRELNVFRNNRVMTLPEGKNQ