Protein Info for Sama_1717 in Shewanella amazonensis SB2B

Annotation: putative lipoprotein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 595 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF05960: DUF885" amino acids 62 to 593 (532 residues), 371.7 bits, see alignment E=5.9e-115

Best Hits

KEGG orthology group: None (inferred from 100% identity to saz:Sama_1717)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A1S6B6 at UniProt or InterPro

Protein Sequence (595 amino acids)

>Sama_1717 putative lipoprotein (RefSeq) (Shewanella amazonensis SB2B)
MKKTTLALAISLAALSLGACTDSTTSSGHVQHATASSVTSQQTQSFASFSEAFIDSLWQV
APTWALYSGYHKYDGILEVADEAQRAKTLAFVNSQREMLQAFNTKNLSTSELIDYRLIEN
LLNSVEWEQTRFRAWQWDPSGYNVAGGFAQIINEDFAPLDERLRSVVSRLENVPAYYEAA
RKNIKNPTLEHTELALLQNQGAFSVFNDELIAKVESSGLTDAEKTLFKQRFDAAISAINE
HIIWLETLSNNLKVNGARDFRIGEALYEEKFALDIQSGMTAKALYNKASADMVRVHAEMA
RITKEIWSKYFTETMPDDSKVATRMLIDKLSAKHVKREDFVNEVRAQIPELVKFVNDKQL
ITLDPNKPLVVRETPEYMRGYAGASISAPGPYDKGGNTYYNVTPLDGMSDESAESYLREY
NHWILQVLNIHEAIPGHYTQLVYSNESPSLIKSLFGNGAMVEGWAVYTERMMLEEGYGNF
EPEMWLMYYKWNLRVIANTILDYSIQVKGMTQEEAMTLMMEEAFQQEAEAAGKWRRATLS
QVQLTSYYAGYREIYDFREELKAKSPESFDLKAFHERFLSFGSAPVKYIRELMVN