Protein Info for Sama_1615 in Shewanella amazonensis SB2B

Annotation: hypothetical protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1297 transmembrane" amino acids 38 to 59 (22 residues), see Phobius details amino acids 66 to 83 (18 residues), see Phobius details PF04357: TamB" amino acids 958 to 1296 (339 residues), 199.5 bits, see alignment E=5.3e-63

Best Hits

KEGG orthology group: K09800, hypothetical protein (inferred from 100% identity to saz:Sama_1615)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A1S616 at UniProt or InterPro

Protein Sequence (1297 amino acids)

>Sama_1615 hypothetical protein (RefSeq) (Shewanella amazonensis SB2B)
MSQDMNQTTPSMGSDSPNTPKPVTKVLPWYHPWPLFKLVTRLVVYIPLLFLVLLALVLGT
PFGARIAVSLAASLVPNFSASYVSGTINRDLALSDIRWSMDGIAVEGKALLVEWQPSCLL
AKGLCVQNLSLDGLALVIETDKLPKGESEPAPATEKLILPFSISLDKAQLTSVDVRVDTM
KFGADYLMAAAKWQEDGLKVDELQSRGLQVFIPIPGEADTGAQGSTITSDNTAMDSAAPT
EGSWPLASLPTIALPMNLQLLKADLTDTHLAILGEDEVISRLLLGADFEGSALTLQELKL
EHPEAELELKGTVDLSADYPMALKLNVNTHSPSRFPDIGEQQLQLDVNGNLSQLTLKVQA
KGTLNFELDAGAALTNPEVPFTLTLSKANVGWPLQAPEYQGQELSVVASGNLNAQQASIN
GNVITPFHTPLLLNAVLSHQAQSLEITEAAVSGEPGNIHLSGTLNYADGLDWRAGVSFDK
LTPSALVLPEGVTLPKGSLDGAFETSGTFETRGTVKNQWQISLSQADIHGELAGFPVTLT
GDVTVNEKLHLSAQDFLLTAMGAKLTLNGNVEDDWDLQGLILAPDLSLLAEGLNGKFMAN
LDVSGSNKDPLVNLQAQGEAIKFGTTQLESLAIKGLYQPFAKHEFALSLKGSALQLGSRK
LESVTLGAKGDINKQKLRAESFGDIRLDTVVESQFDEKTQLIEASVTRFDLGSEFGDWGL
SQDLHLTWELASNSGTLNEACFTQGNNALCLPRPATLGSTGDVAISFRGEPGAIIDKLLP
TNMDWKGKASLDAAVDWSPKRKPAGELSLVFEPGSVTLLRPKGKVVEVGFEALSAKASLS
PETLTADLNLRSSRLATLDSRVEIAVTPDRALGGYIHLDRIQLEALREFLPQLDTLQGEI
SSELTLAGTLMSPEVSGNLALANGAFSASANPTLISDVDMLLAFAGQQASLNGSWVMGDG
KGGIEGSLAWPDGQFSGELAVKGDKLAVIVPPMALLDVSPDVTLTFDAAMLDLKGSVNIP
TGNIKIVQLAEGGVAVSPDVVFDDSIAEAEQKTSPYGVTADLNIRVGDQVKIEGMGLKGR
LDGTLRLQQQAFKPPLLFGDVKVLSGSYKFMGQTLKIPKGEVQFVGPPQLPNLNIEAIRE
IKDEDLIAGVRITGTGMAPEVTLFSNPSKEQAEILSYILKGKGFASNGSGDNNALMMGAA
LSLSSSLSGGAIGNIGSTATSLVEKFGFSNVQLDTNDEGRVAISGYIGENLMVKYGVGVF
NPGYEMTVRYYLLSQLYLETVSGTVGQSLDIYYSFDL