Protein Info for Sama_1612 in Shewanella amazonensis SB2B

Annotation: peptidoglycan binding domain-containing protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 472 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details PF01471: PG_binding_1" amino acids 156 to 214 (59 residues), 32.1 bits, see alignment E=1e-11 PF03734: YkuD" amino acids 242 to 409 (168 residues), 73.9 bits, see alignment E=2.2e-24

Best Hits

KEGG orthology group: None (inferred from 100% identity to saz:Sama_1612)

Predicted SEED Role

"L,D-transpeptidase YcbB"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A1S613 at UniProt or InterPro

Protein Sequence (472 amino acids)

>Sama_1612 peptidoglycan binding domain-containing protein (RefSeq) (Shewanella amazonensis SB2B)
MARVYWIFLLSLVTSAALGTQGSYSRQLMRDQASLLILAEPSLEIELSPLLRNFDTDSKS
LERDYLKLKNAWHQLGVHSSPGDMDQSGKMGANRSETVESAHHQNATQDLNSRLIALEPN
DRFLNTMNRLRHLLWLAEQPWQPIVLNGLLRPGDSHTEVVAIAKRLWLLGDMETEPGYAL
SRYDDEVAQGVKAFQHRHGLKQDAVIGPKTLYWLNLAPDTRAARLARDYLLQSRERQTLP
STYVLVNIPAFDLELVDDGEALMHSRVIVGKPSRKTPFIQSEISAVVVNPSWRVPRRLMR
LDVLPKVRKDGSYLSRKGFIVWSREGEEVKETDDFFQSAAAGKFPYLLEQRPGPDNALGR
FKLHFANEDNVYLHDTPDKHLFDEPMRALSSGCVRVEKINELSAWLANGRLADPRRWQQT
LQTPQTTRWFTLKERLPVHFVYWTSWVDAEGKAQFREDIYGIAQNNQILAAK