Protein Info for Sama_1567 in Shewanella amazonensis SB2B

Annotation: amino acid transporter LysE (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 206 transmembrane" amino acids 6 to 29 (24 residues), see Phobius details amino acids 42 to 66 (25 residues), see Phobius details amino acids 72 to 92 (21 residues), see Phobius details amino acids 113 to 135 (23 residues), see Phobius details amino acids 147 to 168 (22 residues), see Phobius details amino acids 186 to 204 (19 residues), see Phobius details PF01810: LysE" amino acids 15 to 203 (189 residues), 86.9 bits, see alignment E=6.4e-29

Best Hits

KEGG orthology group: None (inferred from 100% identity to saz:Sama_1567)

Predicted SEED Role

"Putative threonine efflux protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A1S5W8 at UniProt or InterPro

Protein Sequence (206 amino acids)

>Sama_1567 amino acid transporter LysE (RefSeq) (Shewanella amazonensis SB2B)
MPDFTLLAVFIPTFLFVSITPGMCMTLAMTLGMSIGVRKSLWMMAGELVGVGLVALAAVL
GVAAIMLNYPQLFAALKYVGGAYLVYLGINLWRSRGKFALSNEPGPSPHPMALISQGFLT
AVANPKGWAFMVSLLPPFISVERPMAPQLMALLSIILITEFACLMLYASGGKSLKALLSR
GDNLTLLNRIAGSLMAFVGIWLAFGD