Protein Info for Sama_1514 in Shewanella amazonensis SB2B

Annotation: SMC family protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1139 PF13175: AAA_15" amino acids 1 to 67 (67 residues), 39.8 bits, see alignment 9.1e-14 PF02463: SMC_N" amino acids 3 to 1122 (1120 residues), 230.4 bits, see alignment E=3.6e-72 PF13476: AAA_23" amino acids 5 to 224 (220 residues), 66.4 bits, see alignment E=1.1e-21 PF13304: AAA_21" amino acids 26 to 95 (70 residues), 30.7 bits, see alignment 6.4e-11

Best Hits

KEGG orthology group: K03529, chromosome segregation protein (inferred from 100% identity to saz:Sama_1514)

Predicted SEED Role

"Chromosome partition protein smc" in subsystem Two cell division clusters relating to chromosome partitioning

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A1S5R5 at UniProt or InterPro

Protein Sequence (1139 amino acids)

>Sama_1514 SMC family protein (RefSeq) (Shewanella amazonensis SB2B)
MRLKQIKLAGFKSFVDPTRIPFPNPLTAIIGPNGCGKSNVIDAVRWVLGESSAKHLRGDS
MTDVIFNGSSARRPVSVAGVELVFDNREGRLGGQYASYEEIAVKRQVSRDGESLYFLNGQ
KCRRKDITDLFMGTGLGPRSYAIIEQGMISRLIESRPQELRVFIEEAAGISRYKERRRDT
ENRIRHTRENLERLGDIRLELGKQLDKLAVQAEAAKRYREYKQAERTTHAELLVMRYQEI
CQQADALGREITQQDFLYQSAKTSLDTTAARLDEQKLVLAALVDEEQDTLEAYYLAGTEV
ARLEQQLSHLEERSHSLRSRGDSLAEEISGLMARQASLEAAQQEAADKLAGQEDALLGLE
ETQDAWSQSAEEAEEVLEQLKDAVTQAERRHGETKARCELTSQRLVHLKQVSQEKAQSLS
GYREQQASQGDEDVDPVTPPSEQILVPLTVRFDNAKAAESQVKAALVECEQALAKCRGEQ
SEAQGRYSVLSRLLDDNAVNDAGSARTKLWQRLDVAAGWEKTAELLLGHLLEQPLFEDTA
FGEDAFDGRGFRYQEKGDWGIMQAPANLAPWLDTVGFAESLNEAQERLVGTAQSTLIATK
DGYLVGHGLVLQQQGTGTDKVALKAEAEALGARIGQIQAELAQYERAVAQQRDALNLARI
HREAVEAELFEAKQQQARQQTLWEASVAHQAQRAKQRAFIDEQIQRLTQQHEQSLLELEV
ADEALVQQEEALEQAAEALAQVREQLIPARRMAEERRASVANIDKSVEAAKATRAELATS
LALINQQMASGKEQLSKLLTQKATLDAELKAQSEHSGDADREALSMKLREQLATQQTRQT
ALAENRSRQAQVQEQIDALLLKQKQEVGKIDHLTHTLESLKLRREGLKGQGDTQLGQLAE
ANIRLNEVLPSVPPHASVEEWQQRLEKLRSKISRLGAINLAAIEEYDEAKARKDYLDEQD
RDLEQALESLEEAIRKIDRETRSRFKATFEQVNADLGTLFPKVFGGGSAYLALTDNDLLE
TGVTIMARPPGKKNSTIHLLSGGEKALTALSLVFAIFRLNPAPFCMLDEVDAPLDDANVD
RFCRLLQEMSASVQFIYISHNKITMEMADQLVGVTMHEPGVSRIVAVDIEEAVAMAHTE