Protein Info for Sama_1509 in Shewanella amazonensis SB2B

Annotation: hypothetical protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 375 transmembrane" amino acids 52 to 76 (25 residues), see Phobius details amino acids 85 to 104 (20 residues), see Phobius details amino acids 271 to 292 (22 residues), see Phobius details amino acids 323 to 342 (20 residues), see Phobius details PF06271: RDD" amino acids 277 to 354 (78 residues), 60.4 bits, see alignment E=1.2e-20

Best Hits

KEGG orthology group: None (inferred from 100% identity to saz:Sama_1509)

Predicted SEED Role

"FIG01057717: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A1S5R0 at UniProt or InterPro

Protein Sequence (375 amino acids)

>Sama_1509 hypothetical protein (RefSeq) (Shewanella amazonensis SB2B)
MTKPQANHTGALPGGKDPRTIITPHAFSVNEGLLYTPLASPVKRALAISIDGLVIAVLAE
EAGVVFVLLVLLASYLNKRLTSIGRYAKLAIYLLMTLVMLYVLSESFVQRGQVGENLGER
PSDVVSATQLLALVPHTTALALCDTPDCVDEQADALATELAASSLHREEAEALLFGTLDE
VSLTDAQRSVLKERLSMRLAQLPLRSANPAGADISAAPHAGQGSVPEADKSPGKVTISPG
NDDERNVETGSFENAAPTGNYSLIQWVKGILNDLGLGFGWAAFYFTVFTAWFDGQTLGKK
LLGIRVISLDGSKLGLWAAFGRYGGYGAGFATGLLGFLQVCWDANRQAIQDKISSTVVID
LTKPRQTPISEGNKT