Protein Info for Sama_1487 in Shewanella amazonensis SB2B

Annotation: ABC transporter, permease, putative (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 818 signal peptide" amino acids 1 to 38 (38 residues), see Phobius details transmembrane" amino acids 247 to 267 (21 residues), see Phobius details amino acids 294 to 317 (24 residues), see Phobius details amino acids 337 to 360 (24 residues), see Phobius details amino acids 380 to 400 (21 residues), see Phobius details amino acids 406 to 429 (24 residues), see Phobius details amino acids 459 to 477 (19 residues), see Phobius details amino acids 690 to 711 (22 residues), see Phobius details amino acids 745 to 767 (23 residues), see Phobius details amino acids 782 to 800 (19 residues), see Phobius details PF02687: FtsX" amino acids 250 to 367 (118 residues), 33.3 bits, see alignment E=2.2e-12 amino acids 696 to 797 (102 residues), 34.3 bits, see alignment E=1.1e-12

Best Hits

KEGG orthology group: K02004, (no description) (inferred from 100% identity to saz:Sama_1487)

Predicted SEED Role

"FIG00809136: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A1S5N8 at UniProt or InterPro

Protein Sequence (818 amino acids)

>Sama_1487 ABC transporter, permease, putative (RefSeq) (Shewanella amazonensis SB2B)
MLKSLALRLFWRELRQGQLLLILFAISLAVLAVTGLARVSERLQVAISGEAAKFTAADRV
VDSPQPLSTELLARIDAIGLARADSMLFNSMAWSGDAFQLVTVRAVGNSYPLKGEIELAD
GPTGLLPEAGTLWYEGRLAGLIGQSESLELGDRQFNLTKEIKRLPDAGFNPFASSPVVLM
GLDDVASTGIVGPGSRVTYLYQFSGDSAQLAELDELLKAELTSSQRLRDVKSGDSPIASA
VARAERFLLLASLLGIALACAAIGIAAQRYCQRHYDVVAMFKTFGASAKEIRTLFALHLS
LVTAFGVLVGILGGLGLDAVIARFLPPELTAYEAPLLRPVLLGVLTGSISALMFSAYPLL
RLLAIPPLRVLQRELTGRSAGVWLHAALSLSAMALLGYAYSRSWQLTGAVVLGALLLGLI
LFALGFVMIRLGHGAGLKTTNPLQLALAGLRRRAAQNSVQLVGFSTALVLLLTIFALRQD
LLDDWQKQLPEGAPNFFLVNISPEDEAPMAEFLAENHIERTDIYPVIRGRLSAINGEALI
SERQSEEGATGRVGIGRELNMTWRDSLPPNNRLIAGEFDNVADGVSVETKVAERLGLKLG
DSLSFVIDNQTLDVRVTSLREVRWETMQPNFFMIFSKEALAPFAYTSMLSFHLDEAKRPL
VVSLIKQFPTVSVIDVGAMVAQLRSIVSQVSLALGVVLALVIASSSLVLWAQTEAGMSVR
RRELAVLRTFGAGGRLLRLATTLEFAVLGAVAGIVAVVVTEAVLYLLKTWVFELGVNWHL
QWWLQAPLLGAALVAVLGYWRCRELLSQSCLSLLRTET