Protein Info for Sama_1228 in Shewanella amazonensis SB2B

Annotation: peptidyl-prolyl cis-trans isomerase D (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 615 transmembrane" amino acids 12 to 34 (23 residues), see Phobius details PF13624: SurA_N_3" amino acids 1 to 165 (165 residues), 157.5 bits, see alignment E=8.3e-50 PF13623: SurA_N_2" amino acids 2 to 142 (141 residues), 126.5 bits, see alignment E=2.3e-40 PF09312: SurA_N" amino acids 43 to 162 (120 residues), 34.6 bits, see alignment E=5.7e-12 PF13145: Rotamase_2" amino acids 249 to 379 (131 residues), 80.4 bits, see alignment E=5.6e-26 PF13616: Rotamase_3" amino acids 265 to 366 (102 residues), 101.1 bits, see alignment E=1.8e-32 PF00639: Rotamase" amino acids 275 to 364 (90 residues), 86.3 bits, see alignment E=7e-28

Best Hits

KEGG orthology group: K03770, peptidyl-prolyl cis-trans isomerase D [EC: 5.2.1.8] (inferred from 100% identity to saz:Sama_1228)

Predicted SEED Role

"Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8)" (EC 5.2.1.8)

Isozymes

Compare fitness of predicted isozymes for: 5.2.1.8

Use Curated BLAST to search for 5.2.1.8

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A1S4X9 at UniProt or InterPro

Protein Sequence (615 amino acids)

>Sama_1228 peptidyl-prolyl cis-trans isomerase D (RefSeq) (Shewanella amazonensis SB2B)
MLEKIREGAQGTIAKSILVLVILSFAFTGVSSYLGSSTEPAAATVNGEEIPVSALEQAFQ
NEKARMEQQLGEMFQTLAADDNYLRSIRQGVLERMIADKLLDQTASEMGLRISDEQIKQA
IMEEPAFQTEGKFDNERYLAILRQLGYQTNSFRDMMRVDMTRRQLVNALIGSEFVLPSES
KAVAELQGQTRDLRYLVVESQPFEAGITVADDEAKSFYDANPDQFIKPEQVSLEYLTLSA
KSLADEVSVTDEQAKAYYDEHMSQYKTPEKRLAAHILVNLGDDEAAAKTKADAIYAKLQA
GADFAELAKTDSEDTFSGELGGQLDWFEQGVMDPAFDEALFGLEKDQYSAVVKTDYGFHI
IKLLDVQGGAQASFDEVKDRIFAQIKEKDALDKFYSLQQKLADTSYEVPDSLTEAAKATG
LEVKSTGLFAREMPPAEISNPALIKAAFSEQVLLSGMNSDVVDLGDNQVAVVRVKEHKQA
GTLPFDEVKAGIVARLTQDKANDAAKLQAQELLAKFKAGEALELTAKAKVARFDRELDPS
IVNKGFQLAVGGADTISMASGYALVVLDKVNPAEGVEDALVQALAQRLSNQYTELAYRGV
IDSLKAKAEISYAAE