Protein Info for Sama_1212 in Shewanella amazonensis SB2B

Annotation: outer membrane protein, putative (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 698 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details TIGR03509: decaheme-associated outer membrane protein, MtrB/PioB family" amino acids 58 to 698 (641 residues), 527.3 bits, see alignment E=3.2e-162 PF11854: MtrB_PioB" amino acids 64 to 698 (635 residues), 700.4 bits, see alignment E=1.3e-214

Best Hits

KEGG orthology group: None (inferred from 100% identity to saz:Sama_1212)

Predicted SEED Role

"outer membrane protein, MtrE"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A1S4W3 at UniProt or InterPro

Protein Sequence (698 amino acids)

>Sama_1212 outer membrane protein, putative (RefSeq) (Shewanella amazonensis SB2B)
MKPHFSPTLSLIASAILLGMSGQVLAGYGLKDANRSTVKKEAWVCKGCEIKSESTSAITA
GVAWQDGENSHFANTTGTDADGATGFVSADIQHRGDKDYRLDFQADKLGFDASSARLAIK
KPGHYQFYLDYRALARYDTNQGVTPYSAEGDLLVLPDNWQTAGTTAGMTRLQDAHTVKLE
KKRQRFELGGAVTGDSFTSELNFRHETREGAQRSSVNLLTNAAMVAKPIDDSTDTLDAKV
YWRGDRFLGGINGQISKYSNDHQRLAFDNAFYPTFGAAYNGQMAVDPDNQAFSLGTDLQF
FEGAQQAIMRARFSHLTQDEPLLNATVTGPSPALPVMSPDTQVDLMELGLAYSNRLSREF
SVRASYDFRDRDNKTPEYLYPLVTTDSIYRGEYYNKGYDRTRQLLKLGAKYRFSRQWDLD
TLYRYDHNSYSELSRDSVFENHVEATVRGQIMAGWRVSLKGEVSARRGDSYQTSSNTQMP
NQSAMRQYFLADRDKRELRLMTDHYFADVSLQFNVHSGNEDYSESELGLGEVQYTGFGMN
AGYPLTEHLLLNGFLGMDWRDTTQFGSNSGVSRWTGENRDEHTSASLGLKWQNLMDNKLS
LGLDYGYSDGNSDTEVSLGLSNIYGPYSATRHNVSAYANYQLSDAMSLRIDWLYENYSDM
DWGNDGLTPDSIPNLILLGSLSHDYQAHYLGFSFSYQW