Protein Info for Sama_1198 in Shewanella amazonensis SB2B
Annotation: N-acetylglucosamine-6-phosphate deacetylase (RefSeq)
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
KEGG orthology group: K01443, N-acetylglucosamine-6-phosphate deacetylase [EC: 3.5.1.25] (inferred from 100% identity to saz:Sama_1198)Predicted SEED Role
"N-acetylgalactosamine-6-phosphate deacetylase, predicted alternative (EC 3.5.1.25)" in subsystem N-Acetyl-Galactosamine and Galactosamine Utilization (EC 3.5.1.25)
MetaCyc Pathways
- peptidoglycan recycling I (11/14 steps found)
- N-acetylglucosamine degradation II (3/3 steps found)
- N-acetylglucosamine degradation I (2/2 steps found)
- superpathway of N-acetylneuraminate degradation (16/22 steps found)
- D-galactosamine and N-acetyl-D-galactosamine degradation (2/4 steps found)
- N-acetyl-D-galactosamine degradation (2/5 steps found)
- superpathway of N-acetylglucosamine, N-acetylmannosamine and N-acetylneuraminate degradation (2/6 steps found)
- chitin derivatives degradation (3/8 steps found)
KEGG Metabolic Maps
Isozymes
Compare fitness of predicted isozymes for: 3.5.1.25
Use Curated BLAST to search for 3.5.1.25
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See A1S4U9 at UniProt or InterPro
Protein Sequence (411 amino acids)
>Sama_1198 N-acetylglucosamine-6-phosphate deacetylase (RefSeq) (Shewanella amazonensis SB2B) MADVGSNCLPENLNDCWLNPEFVLVGADDASEFGVTGNAIAALVPDVWLKISQGHIETIS RRPDVDLPQYRLPGILAPALVDTQVNGGGGVLINHQPTAAGINTLTQTHGQYGTGALLPT VISDNLAVMEQALDGAIAARQGGDAAVVGIHFEGPHLSLAKKGCHSPALIRPIGEAEMTL YADAVAALGCCMVTLAPETVEPADIARLVALGVRVSLGHSNADVATVEASLAAGASGFTH LFNGMSALQGREPGMVGAALACPEAYCGIILDGEHVHATSATLAWRLKGTRRLMLVTDAM SPTGTREESFEFFGGKVHRDGMVLRDEQGSLAGSVLTMTAAVRQACAMLGVSAAEALWMA TATPAAFLGLKDIGRLAPGNRADLLLLDDALYQLGRWQAGQLVAGQEPPLD