Protein Info for Sama_1167 in Shewanella amazonensis SB2B

Annotation: amidohydrolase-like domain-containing protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1018 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF01979: Amidohydro_1" amino acids 853 to 944 (92 residues), 53.8 bits, see alignment E=2e-18 PF07969: Amidohydro_3" amino acids 888 to 947 (60 residues), 44.7 bits, see alignment 1.4e-15

Best Hits

KEGG orthology group: None (inferred from 100% identity to saz:Sama_1167)

Predicted SEED Role

"Secreted enzyme, contains two amidohydrolase related domains"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A1S4R8 at UniProt or InterPro

Protein Sequence (1018 amino acids)

>Sama_1167 amidohydrolase-like domain-containing protein (RefSeq) (Shewanella amazonensis SB2B)
MINNNNLAVLLIGLTLVATHSNAKTLLTSDPTPLIALQGAKLHLAPGQTLEKGTLLIEGN
RIKAVLTGNDIPAGARVVEMAGLDIYPGFIDPFTQYGISFEYPTETKSSPVYEIKRIGGN
AANGAVHAEKQWSQYFAPDKEAALSWINNGFTSVQSAKLDGIFRGQGVHVSLADKIANEV
VYRAQANHYLSFDKGSSAQDYPSSLMGAMALIRQTFMDAAWYNENRSKLSAAVAPGQLEF
NAALQGLGNTQAQYFIFDTPDLNNQQRASALMREFKLKGALLGNGREYARIDEIKAKGYP
LILPLSFPAAPDVSQPGTEYQLNLADLRHWERAAGNGQALEQAGIGFALTLHGIEDKKDF
WPRLQKAIKAGLSEQTALAALTTQAASIAGISDTAGKLNPGFVADLAIYQGNPFSDGKLV
SVFLQGQEKVIIPRDQLAVTGSYTVTINNQPVPFEVSYDQGLTFKVADKSAPLTGTGMPL
TTRVELPGLDGKPRLTLDLHTLKAVAYADDGTQTPLTLAKVDTKNASNSLADTSGPEASS
YVGKLTSPNVAFGLASLPEQDKVHIQGATLWTSESQGILENADIIISKGKILSIGTRLMT
PPGYQRIDGTGKHVTAGIVDEHSHIALNGGTNEGTDAVTSEVRIGDVLDPEDVSLYRSLA
GGVTTAQILHGSANPIGGQSQLIKLRWGENAEGLKYQGAPASIKFALGENVKQSNWGDNF
TIRFPQSRMGVESVMADAFDAAREYQRDIKAFNALDKRSQAERVSPRPNLRLDAVAEVLD
KGRDVHIHSYVQSEILMFLRLAETYGFKVKAFTHVLEGYKVAKELAAHGAGASTFSDWWA
YKFEVYDAIVQNACLMHQAGVLTSLNSDSFEMQRRLNQEAAKSMMYCDMSAEDAWKMITI
NPARQLGIDKETGSLKEGKVADLVLWDANPLSVYARTEAVWIDGKRFYDRETDKQMQAAQ
ASERQALVAKILSLDESEKAGEKSEQKQEPLWHCDSHYIAFGTRASHLGAQHQHQGAH