Protein Info for Sama_0895 in Shewanella amazonensis SB2B

Annotation: hydroxylamine reductase (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 554 transmembrane" amino acids 492 to 506 (15 residues), see Phobius details PF03063: Prismane" amino acids 1 to 547 (547 residues), 553.2 bits, see alignment E=3e-170 TIGR01703: hydroxylamine reductase" amino acids 1 to 551 (551 residues), 758.2 bits, see alignment E=2.1e-232

Best Hits

Swiss-Prot: 100% identical to HCP_SHEAM: Hydroxylamine reductase (hcp) from Shewanella amazonensis (strain ATCC BAA-1098 / SB2B)

KEGG orthology group: None (inferred from 100% identity to saz:Sama_0895)

Predicted SEED Role

"Hydroxylamine reductase (EC 1.7.-.-)" in subsystem Nitrosative stress (EC 1.7.-.-)

Isozymes

Compare fitness of predicted isozymes for: 1.7.-.-

Use Curated BLAST to search for 1.7.-.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A1S3Z6 at UniProt or InterPro

Protein Sequence (554 amino acids)

>Sama_0895 hydroxylamine reductase (RefSeq) (Shewanella amazonensis SB2B)
MFCIQCEQTIRTPAGNGCSYAQGMCGKLAATSDLQDLLIYMLKGVSAWAVKARELGLPPT
EADTFVPKAFFATLTNVNFDDERIIEYARKAESLRNVLKTQCTEAAQKAGIRLESLPDSA
SVLLGTSKPELLEQAKAALPNLGKDDIHEDVMALRLLCLYGLKGAAAYMEHARVLEQQSA
DIAAEFHRIMAFLGTDSVDADALFTVAMDIGQLNFKVMAMLDEGETAAFGHPEPTQVNTK
PVKGKAILVSGHDMKDLELILKQTQGKGINVYTHGEMLPALAYPEFKQYPHLVGNYGSAW
QNQQKEFANFPGAVVMTSNCIIDPNVGQYADRIFTRSIVGWPGVVHLEGDDFSAVIEKAL
SLEGFLYDEISHQITIGFARNALMAAAPAVVENVKNGSIRHFFLVGGCDGDKAERSYFTD
FAKATPNDSLILTLGCGKYKFNKLEFGDINGIPRLLDIGQCNDAYSAIQLAIALSEVFEC
DINELPLSLVLSWFEQKAIVILLTLLSLGVKNIRTGPTPPAFLTPNLLKVLEDKFGLKNT
TTVEADLNAILNVA