Protein Info for Sama_0885 in Shewanella amazonensis SB2B

Annotation: hypothetical protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 175 transmembrane" amino acids 21 to 42 (22 residues), see Phobius details amino acids 48 to 67 (20 residues), see Phobius details amino acids 72 to 91 (20 residues), see Phobius details amino acids 96 to 115 (20 residues), see Phobius details amino acids 130 to 149 (20 residues), see Phobius details PF06127: Mpo1-like" amino acids 1 to 145 (145 residues), 69 bits, see alignment E=1.6e-23

Best Hits

KEGG orthology group: None (inferred from 100% identity to saz:Sama_0885)

Predicted SEED Role

"FIG01056992: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A1S3Y6 at UniProt or InterPro

Protein Sequence (175 amino acids)

>Sama_0885 hypothetical protein (RefSeq) (Shewanella amazonensis SB2B)
MKTAAEQLARYKSVHLNPNNIKTHFVGIPLIIWSAFVWLGLIRFELGGFGEASAAMVFTL
VVLAYYLKLHLRLAVGMLMFILPVLYTSDMMATVPHAAWIAAVVFVIGWVFQLIGHKYEK
AKPAFVDDMNQLLIGPFFLMAEVYFALGFEKALEREITPQAIALRRVLEASRKTA