Protein Info for Sama_0883 in Shewanella amazonensis SB2B

Annotation: pyridoxine 5'-phosphate synthase (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 245 PF03740: PdxJ" amino acids 6 to 238 (233 residues), 355.4 bits, see alignment E=5.2e-111 TIGR00559: pyridoxine 5'-phosphate synthase" amino acids 6 to 239 (234 residues), 344.5 bits, see alignment E=1.6e-107

Best Hits

Swiss-Prot: 88% identical to PDXJ_SHEON: Pyridoxine 5'-phosphate synthase (pdxJ) from Shewanella oneidensis (strain MR-1)

KEGG orthology group: K03474, pyridoxine 5-phosphate synthase [EC: 2.6.99.2] (inferred from 100% identity to saz:Sama_0883)

MetaCyc: 71% identical to pyridoxine 5'-phosphate synthase (Escherichia coli K-12 substr. MG1655)
Pyridoxine 5'-phosphate synthase. [EC: 2.6.99.2]

Predicted SEED Role

"Pyridoxine 5'-phosphate synthase (EC 2.6.99.2)" in subsystem Pyridoxin (Vitamin B6) Biosynthesis (EC 2.6.99.2)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 2.6.99.2

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A1S3Y4 at UniProt or InterPro

Protein Sequence (245 amino acids)

>Sama_0883 pyridoxine 5'-phosphate synthase (RefSeq) (Shewanella amazonensis SB2B)
MSRILLGVNIDHIATLRQARGTNYPDPVHAAAVAEHAGADGITIHLREDRRHIIDRDVYL
LAKTLKTRMNFECAVTEEMLNIACEVKPTYVCLVPEKREELTTEGGLDVAGQKDKIRAAV
ERLTAQGILVSLFIDADKTQIDAAHEVGAPYIEIHTGRYADAHTEAEAEIELERIASMAK
YAHGLGITVNAGHGLHYHNVKPIAAIPELYELNIGHAIVARSAIDGLEKAVRDMKQLMLE
GRRGE