Protein Info for Sama_0835 in Shewanella amazonensis SB2B

Annotation: peptidoglycan binding domain-containing protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 613 transmembrane" amino acids 280 to 299 (20 residues), see Phobius details PF13191: AAA_16" amino acids 25 to 156 (132 residues), 51.4 bits, see alignment E=3.9e-17 PF13401: AAA_22" amino acids 42 to 171 (130 residues), 93.8 bits, see alignment E=2.2e-30 PF09848: SLFN-g3_helicase" amino acids 46 to 206 (161 residues), 21.1 bits, see alignment E=3.6e-08 PF01471: PG_binding_1" amino acids 541 to 596 (56 residues), 41.6 bits, see alignment 2.3e-14

Best Hits

KEGG orthology group: K02450, general secretion pathway protein A (inferred from 100% identity to saz:Sama_0835)

Predicted SEED Role

"General secretion pathway protein A"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A1S3T6 at UniProt or InterPro

Protein Sequence (613 amino acids)

>Sama_0835 peptidoglycan binding domain-containing protein (RefSeq) (Shewanella amazonensis SB2B)
MYKAFYGLKDNPFSIAPNPTYLFLSDRHREALAHLTYGLGETGGFVLLTGEVGTGKTTVS
RCLLRQLPDTTDTAFILNPALTELELLATLCDELKIPYGESPSLKRLTDLISGFLLKNHN
AGRNTVLIIDEAQHLKAEVLEQLRLLTNLETDTKKLLQVILIGQPELQQLLKRQELRQLA
QRITARYHLLPLTAEEVGLYVQHRLQVAGRFEPLFNAGAIKALHKASGGIPRIINLLCER
ALMAGFAQSRVPINKQMVRQAAVEVLGLEPQRPSWYERPLPMTLATALTFGVALYGFNYL
NQPVTAATSLALPIADSPVQGAPVQAAPESLQPELQPTATVNQSTIEPLQPDSSGVTSGA
QSETAMENLADIATDSTLQNQVLAQSSPISRITDAGAELAELEARQAKVRERVLTDAVAQ
SRSLDTAYAALFGAWGLAPIKDLSPCESAREQGLSCFQQQGTWFNLVKLNYPAVAYMMDD
AGGEFFVTVIERDGDELLVQLAEQQLWVNRDWFNRHFTGTFELFWQAPVYSPREIGIASP
QPEVQWLENGLAKVDKITPRLVNEFDTELENRLKLFQRQHGLKADGIAGSQTLQQLNLYL
SNEGPRLVQGGLY