Protein Info for Sama_0796 in Shewanella amazonensis SB2B

Annotation: hypothetical protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 369 signal peptide" amino acids 1 to 37 (37 residues), see Phobius details transmembrane" amino acids 54 to 75 (22 residues), see Phobius details amino acids 97 to 120 (24 residues), see Phobius details amino acids 269 to 290 (22 residues), see Phobius details amino acids 301 to 319 (19 residues), see Phobius details amino acids 330 to 350 (21 residues), see Phobius details TIGR04407: LPS export ABC transporter permease LptF" amino acids 2 to 349 (348 residues), 405.6 bits, see alignment E=6.9e-126 PF03739: LptF_LptG" amino acids 5 to 349 (345 residues), 258.7 bits, see alignment E=4e-81

Best Hits

KEGG orthology group: K07091, lipopolysaccharide export system permease protein (inferred from 100% identity to saz:Sama_0796)

Predicted SEED Role

"FIG000988: Predicted permease"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A1S3P7 at UniProt or InterPro

Protein Sequence (369 amino acids)

>Sama_0796 hypothetical protein (RefSeq) (Shewanella amazonensis SB2B)
MIVFRYLFKEVFKAQIAVLLVLLTVFISQHFVRVLADASDGEFPASLVVTLLGLNLPYLA
VLVLPLSLFLGILMAHGRMYAENEMVVFHGVGVSEWYVTRVTLLLAVLNMLFTGYLSLFV
TPWAEERQNQVLEKAQSEAGLAALVQGRFQTSPDGRAVLFVEKIGKDNELEKVFVAQLPD
PDDEHGQINLVSAAGGKVVEDASGAQQLKLNDGVRYQGSPKSLDYQVLEFGGYGMQIKEQ
EVDERRRKMSALPLNQLLDQNTPEAVAELHWRIAIPLAIPLMTLIAVPMARVNVRQGKFA
KMLPAILLYLGYFGLMVAGRKALEDEVVPAFMGMWWIHLSALVMGIMLLGKERPLGAKLS
GRFKRRAAA