Protein Info for Sama_0783 in Shewanella amazonensis SB2B

Annotation: GGDEF domain-containing protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 592 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details transmembrane" amino acids 386 to 405 (20 residues), see Phobius details TIGR00254: diguanylate cyclase (GGDEF) domain" amino acids 414 to 576 (163 residues), 144.4 bits, see alignment E=1.3e-46 PF00990: GGDEF" amino acids 417 to 574 (158 residues), 134.4 bits, see alignment E=1.6e-43

Best Hits

KEGG orthology group: None (inferred from 100% identity to saz:Sama_0783)

Predicted SEED Role

"GGDEF family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A1S3N4 at UniProt or InterPro

Protein Sequence (592 amino acids)

>Sama_0783 GGDEF domain-containing protein (RefSeq) (Shewanella amazonensis SB2B)
MKLRKPLMRNFLVVFALLSVIATAVNAADGTLALLREADSLRSSSPIEFQDKLKEIEKQA
GALNNYESEYLAYLRAYNLSFSGQLNDAYLMYQELAQKSQFDEFRFRALTSMVNTNAIRR
EWTLGLENLRQTIEILPTVENIQLKEHGLAVAAVFYNYLEQHALAKEFALQLAESTSNQR
SLCFALQLRLQADTGLGTIGIGDELFQIALQHCETIGELVVASAIVSYKAELLLKDSQAS
EASQLLDQYLERVNNTGYPPIIASFYTLLAEANLLQNKKAVAAEYATTALKYTSSATNAE
AAMRANKVLFDYHSSRGNSEAALEAYIKYAEADKAYLDEVKTKTLAFQLAEHQSLEQQNK
ISLLDEQNKLLKVQQQLDQAQAYNSRLLIAVLFCITLGLGTWGWHSWQSQRRLKQLAEFD
SLTGLFSRGHFTQVSLSAVEYAKTLNAPISCILLDVDKFKQINDRLGHATGDWALKEVAR
ICKEQVREYEIFGRIGGEEFCLLLPECELKHATDLANAMCQALRGADTSASGHKFELTAS
FGVTDNARAGYSLDKLMAQADKAMYSAKKQGRNQVQCYSANPSVATTPQEAG