Protein Info for Sama_0555 in Shewanella amazonensis SB2B

Annotation: peptidase S8 and S53, subtilisin, kexin, sedolisin (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1399 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details transmembrane" amino acids 1378 to 1395 (18 residues), see Phobius details PF00082: Peptidase_S8" amino acids 194 to 706 (513 residues), 158.3 bits, see alignment E=2.7e-50 PF02225: PA" amino acids 504 to 580 (77 residues), 41.2 bits, see alignment 1.5e-14

Best Hits

KEGG orthology group: None (inferred from 100% identity to saz:Sama_0555)

Predicted SEED Role

"Serine protease, subtilase family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A1S308 at UniProt or InterPro

Protein Sequence (1399 amino acids)

>Sama_0555 peptidase S8 and S53, subtilisin, kexin, sedolisin (RefSeq) (Shewanella amazonensis SB2B)
MNFKLSKIAMALPVSALAFAVHANQPTEEQATYAVTAKNQLLNRKSAEAQLGNKYFVILK
DEPLALYQGGIRGLAATNVKASKHTNVNAKGKLDVNSSKSITYTNYLVNQQSKVFSNIKS
TLKREVPVQAAHTIALNALVMELSDAEAVMLRKMPGVLAVQKDSFKQLLTDVGPTHVGAP
MVWNNPELEGKSRGEGLVVGVIDTGIASYKKKFYSWRPPTPNDFNPAFADVGGDGYDHTN
PYGEGVYFGDCVQNAIWCNDKLVGVVSFDDYKIAVPSYDWRYNTGQDDQGHGTHVAATVA
GNVVLNVPYAVSQIVGTAQQPGWETTNSMFNVNVSGVAPHANIIAYRTCVPGYGCSDSMA
IKAIEHAIENNVDVINYSVGGSPSSPWQSADALAFLSAREAGLHVAVAAGNSGPEAETVG
SPGNSPWVTTVAALSHGRDYSEEKTAVFSGGEGALPEMTGKGKTLALETPTAIVYAGDVE
SEYYQQQQGGPGYCYASAYGNGSLPASYQANNVVGKVVVCRRGGEYNSAPLSRLNKSIAA
KYAGAAGLILINSDDNFDDVVGDFHGIPAIHLNKADGDALLEWLNTGENHMVSILGNSEF
NNNLEKADIAASFTSRGPDFVNKDYLVPDVGAPGVDIYASNIGTGMHSSQLGNIEKQPGD
YMQISGTSMASPHVAGMYLLMKAAHPEWTPAEMQSALMTTAVTEVTEKQYQFDEAGNVVR
DENGVAQFEMVRANNHATGAGSARVNLAIEAGLVMNETKAGYLAADPFAPEWAQKEIPGW
HGEPSQMNIPSLSKGECLIECAWTRTFKAVKDGTWSVSFDVFDEGFTLTADQTSFSLSQG
EEVTLHFTAEANSALAKDWVDARVILTPDDETTPVQTLPVSINFIAGLVPESIEITASRD
NDSAAVNGIVTIGSDNIQVSKSGIAKADIYEFEVRRDATNGSILAKLNEMDDTVYAIPLN
IQADSKRLVIEVLETSSPDLDLYVGIDVDLDGAPTGSPSELPFVRYISATESAYEKIDVI
DPANDTYWILVHNWAEGPEALTENQMLCEEGQQPDEGKECVFEAPIFDSVKLAVTNVQYD
DDSMQVKVADSVAPREELATRVKWDQSMLEGDLYHSVFWLGTNPDLPRNIGAVRVNMTRG
ADDVTVAQPRLDGDLLTSSIKIAANHSGEERTYQISISLAQDVSVASLIADDSPSVSTMQ
MATGDVEYKFEGNVLSWTQTQQDGASAVTFTLVLDASEVTGLVDITPVVTTQVSTSENSV
RAVSEGQTVMFEGRPVFQAVADKSTAKKGDVVRLTATPVDLVISDPEISYIWKQVSGTQV
AIVGAGTAAISFTAPELKSAEEIVFELVGSNGSKQSAPVEISVNVEATIEPPVEQGKSGG
SMGFGLLLLSAAGLLRRRK