Protein Info for Sama_0379 in Shewanella amazonensis SB2B

Annotation: hypothetical protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 734 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details PF01734: Patatin" amino acids 26 to 216 (191 residues), 113.7 bits, see alignment E=1.3e-36 PF07244: POTRA" amino acids 340 to 395 (56 residues), 26.1 bits, see alignment 1.1e-09

Best Hits

KEGG orthology group: K07001, (no description) (inferred from 100% identity to saz:Sama_0379)

Predicted SEED Role

"putative patatin-like phospholipase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A1S2I4 at UniProt or InterPro

Protein Sequence (734 amino acids)

>Sama_0379 hypothetical protein (RefSeq) (Shewanella amazonensis SB2B)
MKKLLSLLLLFPLSLAQAADRPKVGLVLSGGGAKGAAHVGVLKVLEEQNIPVDYVAGTSI
GAYVAGMYALGYSASEIEAIMMNVDWNRGYSDTIPREALSYRDKQLRDKYNIPLNIGYAD
AEVKAPSGVLRGQTMSLLLRESTDVVREFTSFDELAIPYRAVATDLATSQPVILSGGSVI
KAMQASATVPGALQPMLIDGRLLVDGGIANNMPVDVVKAMGADVVIAVDIGSPLVGNEEL
DSTIAVLNQLSTMLTAASTEAQKKLLTEKDVLIRPAIDALSTTDFSIMSTALSLGEEAAR
GQLAQLQGLGIEAQQYADYQQSKRGRSKVWLDDMQRPVVDIVYDNHSRVSESLLEDTLGI
KPGQVVKREDLEAGVNQLYALNRFERVDAEFTDTPEGRVLTVSTKAKSWGPNYFDLGFNW
EDDFTADSAVTLDTAYTMTNLNENGGEWRNELKLGYEKLLGTEFYQPLDRDQEFYGRARY
QYEITAWELFDANNKVFEFDKDSHRIDMGLGLNFAQLGQLELGVTGEKGKISNEALLTED
LTFSSYGGYFQIGYDSLNSISFPTSGNRVTLRVTVRKEDYDIDDYELESSTQVQADWKGA
LGVGNHAFVGKVSLESSDNDGESYVHLAELGGFLNLSGYRKDSLVGAHKVFGAFVYQYDL
GRDALGMTDYPLYLGASLEAGNVWWEMDEVSLQDLIYAGSLYIGTDTDLGPAALGIGLTD
DGQRSFYLFVGKNF