Protein Info for Sama_0361 in Shewanella amazonensis SB2B

Annotation: peptidase M23B (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 299 transmembrane" amino acids 21 to 38 (18 residues), see Phobius details PF01551: Peptidase_M23" amino acids 196 to 290 (95 residues), 113 bits, see alignment E=3.2e-37

Best Hits

KEGG orthology group: None (inferred from 100% identity to saz:Sama_0361)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A1S2G6 at UniProt or InterPro

Protein Sequence (299 amino acids)

>Sama_0361 peptidase M23B (RefSeq) (Shewanella amazonensis SB2B)
MSVTVFIQGRSGVTRWQPGKRWLLLPVLLLATGAGLYQHNSARFESQQASVDNERQARES
QKREVLELKNATESQLATLTAYVARMQAKITRLEALGQQVAQNYKLEDQFDFSAEAGVGG
SSDLGSAIELNQLIEDMNKLALRIDNNDAQLALLETVAANLHIDEERYVSGRPVSKGYLS
SPYGLRNDPFTGRRTMHKGIDFAGTEGADVIATAGGVVTWAGDMFGYGQLVEVDHGNGLR
TRYGHNKTLSVAVGDVVAKGEKIATMGSTGRSTGPHVHYEVLRSGQQIDPQKYVYRKAG