Protein Info for Sama_0267 in Shewanella amazonensis SB2B

Annotation: hypothetical protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 494 transmembrane" amino acids 31 to 57 (27 residues), see Phobius details amino acids 69 to 87 (19 residues), see Phobius details amino acids 93 to 111 (19 residues), see Phobius details amino acids 336 to 355 (20 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 100% identity to saz:Sama_0267)

Predicted SEED Role

"FIG01056976: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A1S272 at UniProt or InterPro

Protein Sequence (494 amino acids)

>Sama_0267 hypothetical protein (RefSeq) (Shewanella amazonensis SB2B)
MQPGSLFTTVGCDNGRRTGAIGLVTYTLPGILVLLFGSGHWLWLPGMLLAALFGLSLMRR
CRDAHRPRGYLVAALVPLPLWLLVLSMAGNAALGLILFALGLGITLLVSVLPSRPVKDYV
DGYWSADMPAPEPLTPRREPTLGGEAPDDAFDSAWDDSDEEETEALGPWHTASSADHDTA
RAHGQPIKPQPHARFRQDTVQDYSATEQDKTAALAVFGMSATREQHLVIEANHGINVASR
HSHDEPDQTIDARHSRDADPHHQDTPIWQQFTQRRAVTGMGDDDIADDTPPSGNETYDSE
PEPRPLRSWSDAFNGDGSLEVLMEAIYLHLKNWWRFYLSGAAAVLFGVAVVAMGMRLSSA
PEEIGSSATGSQGDALQASTRLESGLELALDNEALILSWHANSRSNGIIWSLATAEGERH
CASLLFNNGNRYRPMQVADEQGMRRARFSPLDTQSIVRDLALRGNVQLCGQGFSLKGSQA
AIEGHQDFAVFLAP