Protein Info for Sama_0064 in Shewanella amazonensis SB2B

Annotation: hypothetical protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 397 transmembrane" amino acids 7 to 27 (21 residues), see Phobius details PF03486: HI0933_like" amino acids 8 to 395 (388 residues), 500.9 bits, see alignment E=1e-153 PF07992: Pyr_redox_2" amino acids 8 to 177 (170 residues), 36.4 bits, see alignment E=1.6e-12 PF00890: FAD_binding_2" amino acids 9 to 53 (45 residues), 33.8 bits, see alignment 9.3e-12 TIGR00275: flavoprotein, HI0933 family" amino acids 9 to 394 (386 residues), 429.9 bits, see alignment E=4.4e-133 PF12831: FAD_oxidored" amino acids 9 to 151 (143 residues), 32.5 bits, see alignment E=2.4e-11 PF13738: Pyr_redox_3" amino acids 110 to 174 (65 residues), 31.6 bits, see alignment E=4.3e-11

Best Hits

Swiss-Prot: 56% identical to Y933_HAEIN: Uncharacterized protein HI_0933 (HI_0933) from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

KEGG orthology group: K07007, (no description) (inferred from 100% identity to saz:Sama_0064)

Predicted SEED Role

"NAD(FAD)-utilizing dehydrogenases"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A1S1M0 at UniProt or InterPro

Protein Sequence (397 amino acids)

>Sama_0064 hypothetical protein (RefSeq) (Shewanella amazonensis SB2B)
MSECKHHQVIIIGAGAAGLMCALTAGYRGRDVLLLDNAKQLGRKILISGGGRCNFTNLQT
QPSAYLCANPHFVKSALARFTQWDFIAMVERHGIAYHEKTLGQLFCDESAKEIVEMLTTE
CDWAGVKIQLRTEVLTVSKTETGFELHTSEGHFSCESLVIATGGLSMPKLGATPFGFKLA
QQFGLRVLPTTAGLVPFTLQPEDKSHFECLAGVSLPVTVTSASGQSFSEALLFTHRGISG
PAILQISSYWKPGEAVSIDLLPGLNFVDWYKTISIESPKLSIKNALSRLLPKRFVERLQE
IGAIPDKALNQFSKAEVEALADYFANWSIAPGGTEGYRTAEVTLGGVCTDELSSKTLEAK
ACKGLYFIGEVVDVTGWLGGYNFQWAWSSGHAAGEAV