Protein Info for Shew_3513 in Shewanella loihica PV-4

Annotation: hypothetical protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 182 signal peptide" amino acids 1 to 16 (16 residues), see Phobius details transmembrane" amino acids 27 to 46 (20 residues), see Phobius details amino acids 53 to 71 (19 residues), see Phobius details amino acids 77 to 96 (20 residues), see Phobius details amino acids 128 to 149 (22 residues), see Phobius details amino acids 152 to 152 (1 residues), see Phobius details amino acids 157 to 174 (18 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 100% identity to slo:Shew_3513)

Predicted SEED Role

"FIG017861: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A3QIT1 at UniProt or InterPro

Protein Sequence (182 amino acids)

>Shew_3513 hypothetical protein (RefSeq) (Shewanella loihica PV-4)
MRLFLQLVTGLVVLGYPLAVYFGLNYLPPGVIALLLCSLLLLRLALQRQQVRAMMLPIVV
GIFLTAGSYLAKQTAWLLYYPVVINLSMLALFAYSLKHGPTMIERLARLKEPDLPDEAIP
YLRKVTQIWCGLFVFNGAMALYTASATSLATWTLYNGFIAYLLIGTLLGGEWLYRTFWLK
KS