Protein Info for Shew_3473 in Shewanella loihica PV-4

Annotation: response regulator receiver protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 582 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details transmembrane" amino acids 419 to 437 (19 residues), see Phobius details amino acids 509 to 528 (20 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 100% identity to slo:Shew_3473)

Predicted SEED Role

"Tetratricopeptide domain protein precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A3QIP1 at UniProt or InterPro

Protein Sequence (582 amino acids)

>Shew_3473 response regulator receiver protein (RefSeq) (Shewanella loihica PV-4)
MDFRLIVLSLSLWLIPAYGDTMTELDELAQTVYQYPNKTLTQISALEQRLDQEATSEENR
LRLSLLKCEAFVQLGENEAAINLGRMSEAKAKSLKLNQLSPYFLNCMAAAYIDYGDLRQA
LTLLDSAIYLSREQQQPQSLVNGLMLRGKIDTHIESQSSALEDLRLAQDIYPDTEKQRPQ
WLTPPRPYVQLAMAELLRTKGLYNQAFNNAKGALDSEQTTGKVRLTVLLTLAKIAHYNQE
VKFRDDMVLEAKILLPELATATELAESYTQLAEIEFLRGNDKSAIQLLNIALNTFDKQKK
INDSLRANRLLANIQLANGEQALGTELMQKAIAIGERTNQFDELVYCYGILSRYFADIGQ
YKDAYQYQLKRFEMAQRSYEFLKDTRLLQIKAQLGRYQQLAQDNQPKPIKLDAHISDSYG
LIGILVLFLLLTLFILLNRIRMPKTPLQVSQRDEPMSTQEKMEALLTSAKQIGFPITILL
INPSHLAKADVDRLLTRLSQKIRQQDILLSTSADQILIMLPFTSLAGAQLIARQLSAIIE
PLQNGARVSMGMAVMQHHDTLSSLVKRASVDQLSKYSGQQAH