Protein Info for Shew_3162 in Shewanella loihica PV-4

Annotation: hypothetical protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1188 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF16313: DUF4953" amino acids 584 to 678 (95 residues), 41.3 bits, see alignment E=6e-15

Best Hits

KEGG orthology group: None (inferred from 100% identity to slo:Shew_3162)

Predicted SEED Role

"MoxR-like ATPase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A3QHT0 at UniProt or InterPro

Protein Sequence (1188 amino acids)

>Shew_3162 hypothetical protein (RefSeq) (Shewanella loihica PV-4)
MYKSTVAIAILSAIGLSACGTDEPYQEVKKDERMIAVKDFKDATTSGAAGDQLTSSTTTG
ELASKQPERLFLYTRSLGEAPRYSAPIHGFSQGEAKLVTLRMTENGIQLRQIDRDNIGLD
HDSRFDNEYNKAPVLTIPGDYIDFQCQEDNWGDCTNREEEVTDRNITWDQKKFFIPKFEG
AQIAEENYTDLVTFKQCTTETESAHLVKDGNWEGYEMDLAKGVLNFEIEHTYQANPACFG
KFFKGSFDNLSFTTTEYISVVALDQLASKDFVTIPYSEDENGTFGFFRTQHEYRDGNNAD
GKDGYVRQYLNHFNPKKEAITYFLSNNFFEPKNQPFLDAAKQSITAINIQNKLFETGLPE
LKLAQANERRHGDLRYSNITLFDEPLDNGLAGYGPSAANPLTGEIVSGRVDQYSANLQQG
STRYYRRVQLDYNRGMLDPNSVKDLTGVDYTPSQEAVDRANQVAANKLIAEQNSQSQDPM
VQQPRTEAQPQTIIPDLSTDDASNAPFEELVNQQNKTEAFWAEHNLMSVDQAFGLTGGAL
RELPRGIQGYEIDWKDTQFWVDGIVGGKLKDIEAMPTSFQADLVTKLAAQAFAGTLTHEL
GHTLGLRHNFAGSRDQANFFNEEEIAKFSQAFSEAGYPHLTVKADFSSQMDYNADRFATT
FQKYDLAALRFGYGRQVETQDGSLVSLEAADAKRREELRQGNITGEIQYGALHQIGKEHD
LRYFAFCTDGHVTLNSNCNRFDAGTNNDDIVQYYIDSYHDSYDTMNVRHNRQTLFEDHIL
PYTINRLRGFSDIRQFVEDTATVEELFAFDQNELAEICPGHENYWFCASQRAVEKAADTF
LTAAGLSDIYLHVTYRMNSDDSRALTKVHSLEDILTRLYRLNAGKLDEGFELGQIITAYE
QAPEKLKELLLKADIVEAYQDLLYADVSANKGRLLNGVKAPASSPNHPYVNERDVLGMWP
DKLLAMRQLLTRKSPRSTTGRTYYALADYPKVKDQLEGMLCQMTLGNTVQEINQYLTKPV
LSDSCKAVDAKYYVNDVDYADQHIEALPSYATSLGRYFGFPQSSYEMKGKSNLLQMMLKQ
VVLASRDSDYRGEEKARVWREYVGIHLASDAVAASKQISLQGKNYVATEENQLALMLIDQ
IDTLKALIASSPDLMKHQMNSKGETFQQLVVDPIIARNERVITYLPVL