Protein Info for Shew_3094 in Shewanella loihica PV-4

Annotation: hypothetical protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 253 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details transmembrane" amino acids 79 to 97 (19 residues), see Phobius details amino acids 105 to 123 (19 residues), see Phobius details amino acids 143 to 168 (26 residues), see Phobius details amino acids 180 to 198 (19 residues), see Phobius details amino acids 204 to 224 (21 residues), see Phobius details amino acids 233 to 251 (19 residues), see Phobius details PF01925: TauE" amino acids 12 to 247 (236 residues), 140.7 bits, see alignment E=3.1e-45

Best Hits

KEGG orthology group: K07090, (no description) (inferred from 100% identity to slo:Shew_3094)

Predicted SEED Role

"Membrane protein, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A3QHL2 at UniProt or InterPro

Protein Sequence (253 amino acids)

>Shew_3094 hypothetical protein (RefSeq) (Shewanella loihica PV-4)
MEITLTHGLLLVVTGFLAGIINTLAGGGSNLTLPALMVMGLPAEVANATNRVGVTVQSIT
ALLGFHKHGKLDTQDKGPILLPTILGGFIGAGLAAYAPSTLIKPLLLGTMLLMALIILVR
PAIIAPELGTPVNRVKNTPSSWFWLTLAGIYGGFVQAGVGFVLLAALAGSLRYDLVRANA
LKVFCTLFFTLASLLVFIKEDLILWLPGLILAAGTMVGAHLAVKLAIKVSPKVLKWFLFL
MTLCGSVAAMLSD