Protein Info for Shew_2903 in Shewanella loihica PV-4

Annotation: hypothetical protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 310 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details transmembrane" amino acids 36 to 55 (20 residues), see Phobius details amino acids 86 to 105 (20 residues), see Phobius details amino acids 124 to 136 (13 residues), see Phobius details amino acids 140 to 158 (19 residues), see Phobius details amino acids 170 to 188 (19 residues), see Phobius details amino acids 203 to 224 (22 residues), see Phobius details amino acids 239 to 259 (21 residues), see Phobius details amino acids 268 to 285 (18 residues), see Phobius details amino acids 293 to 309 (17 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 100% identity to slo:Shew_2903)

Predicted SEED Role

"Permeases of the drug/metabolite transporter (DMT) superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A3QH21 at UniProt or InterPro

Protein Sequence (310 amino acids)

>Shew_2903 hypothetical protein (RefSeq) (Shewanella loihica PV-4)
MWIVFTFLAAFMQSWRNALQSQLSRDVKVAGVTLARFLWAGPIAACYLAALYLFLPPDLQ
QAGQQVGQQAGQQVGQESLQLFPAPFWGFVLGAALMQIVATGLMVKLFQLRDFAIGAGLA
KSEAIVAAVFGALFFGTQLSPLGWLGVVIGAVAVLLMSKGAGVARLSPQVLLLGLACGSA
FALTSLWVREASLVLTLPFPHSAAWVLFWVISVQTVILLLFLYLRDRQTLAALWRRPKLT
LAISVTSCLGSIGWFSAMALQAVPYVKTLGQVEVFFTLIVAGSYLKQKVKPKEMTALLLI
AVAAILVIWG