Protein Info for Shew_2799 in Shewanella loihica PV-4

Name: torD
Annotation: chaperone protein TorD (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 211 PF02613: Nitrate_red_del" amino acids 55 to 179 (125 residues), 82.2 bits, see alignment E=1.8e-27

Best Hits

Swiss-Prot: 100% identical to TORD_SHELP: Chaperone protein TorD (torD) from Shewanella loihica (strain ATCC BAA-1088 / PV-4)

KEGG orthology group: K03533, TorA specific chaperone (inferred from 100% identity to slo:Shew_2799)

Predicted SEED Role

"Chaperone protein TorD"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A3QGR7 at UniProt or InterPro

Protein Sequence (211 amino acids)

>Shew_2799 chaperone protein TorD (RefSeq) (Shewanella loihica PV-4)
MNKPSIDQTPANQARARVYRLLSDLFAKEIDHQRLQSLQSAEAQAFFDLLAGEPRLAPEV
NIIQEVLAELGDEASLLNLAADYCGLFLVGGKQSANPYAGLYLTPEGDEEQPQLFGPQHQ
EMLALLKQSKLGVQSDFPEPADHISVILAYVAQQATSLDDKAQQRFIAKYLDAWLAEFAK
RVSDRDPGRFYQALARLTQIWVSLDCEALGA