Protein Info for Shew_2627 in Shewanella loihica PV-4

Annotation: surface antigen (D15) (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 827 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details TIGR03303: outer membrane protein assembly complex, YaeT protein" amino acids 29 to 827 (799 residues), 944.1 bits, see alignment E=3.1e-288 PF07244: POTRA" amino acids 97 to 177 (81 residues), 47.1 bits, see alignment E=4.9e-16 amino acids 181 to 268 (88 residues), 61.4 bits, see alignment E=1.7e-20 amino acids 271 to 349 (79 residues), 54.9 bits, see alignment E=1.8e-18 amino acids 352 to 425 (74 residues), 66.8 bits, see alignment E=3.5e-22 PF01103: Omp85" amino acids 453 to 827 (375 residues), 334.8 bits, see alignment E=1e-103

Best Hits

KEGG orthology group: K07277, outer membrane protein (inferred from 100% identity to slo:Shew_2627)

Predicted SEED Role

"Outer membrane protein assembly factor YaeT precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A3QG95 at UniProt or InterPro

Protein Sequence (827 amino acids)

>Shew_2627 surface antigen (D15) (RefSeq) (Shewanella loihica PV-4)
MRLNKIFASMLLVGASLSGKGWADTFQPFEVTDIQVKGLQRVALGAALLNIPIKVGDTVD
EMRLQQAIKSLYSSTNFEHIEVSRDGSVLVVTVKERPTISVVTFEGNKDIKDEQLQESLD
GSGVKAGESLDRTMLSGIEKSLQDFYYGVGKYGAKVEAQVINLPRNRVELKFKFTEGLAA
EIRQINVVGNTVFSDAELIGMLELKDYVAWWDLFGERRYQKQKLQADLETIKTFYHNRGY
IRFEVTSTQVAMTPDRKGLYITINVDEGEQYKVKEVNLTGDLMGREEVMQAILPIKVGDT
YNGADVTFTEEMYGKYLGRFGYAYPEVKTYPEIDDETKEVALNVNIKPGKRVYVRSINFT
GNQVTKDEVMRRELRQMEGAWLNSAQVEQSKARLNRLGYFETVDTQTVQVPGTDDLVDVD
FTVKEQPSGSFNAGVGYGTESGLSLQFGVQQSNFLGTGNQAGINLNTNKYSKNVNINYTD
PYFTKDGVSLGGSIYWNEFDAQEANLERYKNSSYGIAVNSGFPINEYNRINGGIGYRHNS
ISEISAYEQALRFYNIYRDANDPNADLSFDNFELTLGWYRSTLNRGTFPTDGSSQRLSGK
MTVPGSDLQYFKTDFDTSFYWPINRSHSFVLLTKARLGYGNGYGQYNDNDQILPFWENYY
SGGSSSLRGFKSNSVGPRSFYLYRGSEPCSPDPAGDTCTLPGDPNRVTVSGGRSIGGNAI
ATASVEMIVPTPFLDEAYTNSVRTSFFVDAGNVWDTEFDYDAYRFLPAEQFDKLSDYSDP
GRIRASAGMSVQWLSPMGPMVFSLAWPIKKYEDDDTEIFSFNIGKTF