Protein Info for Shew_2608 in Shewanella loihica PV-4

Annotation: inner-membrane translocator (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 357 transmembrane" amino acids 27 to 46 (20 residues), see Phobius details amino acids 51 to 71 (21 residues), see Phobius details amino acids 77 to 95 (19 residues), see Phobius details amino acids 101 to 122 (22 residues), see Phobius details amino acids 130 to 148 (19 residues), see Phobius details amino acids 177 to 195 (19 residues), see Phobius details amino acids 228 to 250 (23 residues), see Phobius details amino acids 256 to 275 (20 residues), see Phobius details amino acids 282 to 303 (22 residues), see Phobius details amino acids 315 to 334 (20 residues), see Phobius details PF02653: BPD_transp_2" amino acids 50 to 330 (281 residues), 141.1 bits, see alignment E=2e-45

Best Hits

KEGG orthology group: K01998, branched-chain amino acid transport system permease protein (inferred from 100% identity to slo:Shew_2608)

Predicted SEED Role

"Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1)" in subsystem ABC transporter branched-chain amino acid (TC 3.A.1.4.1) (TC 3.A.1.4.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A3QG76 at UniProt or InterPro

Protein Sequence (357 amino acids)

>Shew_2608 inner-membrane translocator (RefSeq) (Shewanella loihica PV-4)
MSSLAMRPCGDFRTSYKADNTIFETKTIRLVTCLVIALACAAPLVLDGYFLTLFIQISYL
GIAALGLNILVGFTGQISLGHGAFFGFGAFASAWLNTSFNIPVVFCIPLAGFLTMGVGMM
FGMPAARIKGLYLAIATLAAQFIIQDFFGRAEWFSGGSSGAMAAPVSLFGFDFDTDMSFY
FIALFALVFMYIWGCNLMRSRDGRAFVAVRDHYLSAEIMGVKLNKYRLLSFGISSFYAGI
GGALYAHYLGYVSSEGFTILMSIQFLAMVIIGGLGSIKGTLMGVVFMVLLPEVLEGMVGL
MKYTDYGNLPMVTDGLAYIKEMAIGLVIILFLIFEPEGLAHRWGQIKNYWKCYPFAY