Protein Info for Shew_2586 in Shewanella loihica PV-4

Annotation: amidohydrolase (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1046 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details PF01979: Amidohydro_1" amino acids 359 to 426 (68 residues), 26 bits, see alignment 5.4e-10 amino acids 632 to 960 (329 residues), 59.1 bits, see alignment E=4.7e-20 PF07969: Amidohydro_3" amino acids 905 to 962 (58 residues), 41.4 bits, see alignment 1.4e-14

Best Hits

KEGG orthology group: None (inferred from 100% identity to slo:Shew_2586)

Predicted SEED Role

"Secreted enzyme, contains two amidohydrolase related domains"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A3QG54 at UniProt or InterPro

Protein Sequence (1046 amino acids)

>Shew_2586 amidohydrolase (RefSeq) (Shewanella loihica PV-4)
MRIHFLSVSASLAACLLASPSAIANSQLTDNTPKLTALSHATLMIAPGETKQDATLLIED
NKIKAIIPNDKIPEDAYVIDMTGKLIYPGFIDPYTNYGIDFKYDQQKVARPVYEIKRIGG
NADNGAVHAEKEWFNYIYPDQEAAKQWIDNGFTSVQTGMLDGIFRGRAATVSLAALKAND
IIYRAKSSHLLAFDKGSSIQDYPNSLMGSIALIRQTLADANWYQANIDKADSATQEKNIE
FNIALERLSDISKSPTVFETKNLNNLLRAAHLLNEFKLPATLVGSGREYARIDEVKASGF
SIIAPLNFPAAPNIKDGDKEREISLAHLRHWERAPSNPHALERAGIPFAFTQHGIKADAF
WPRLRQAVKQGLSQETALAALTTEAAEIAGISAFSGKLKPGFMADLVVTNGDIFTQGKIV
SVWLQGSETQKVPRDRHWLSQGYQLTLGELTLDLDLVDDDKLSGTLASGEQEIKLSDLKY
AKERLTFNAELGEAGYPGISRFTLWFDAQGIHGRMLDKSNRQHPIAGVVMAKNAIDGSGE
SDKSDEQKAAESPAPELVSKLTKPNTAYGLTAQPKAKRLHIKNATLWTSSEQGVLEGYDL
LIRDGRIEKIGQSLKTPSGYQTLDATGKHLSAGIIDEHSHIALNGGTNEDTDAVTAEVRI
GDVINPDDIAIYRALAGGVTTAQILHGSANPIGGQAQVIQMRWGESAEAMKLKQAPASIK
FALGENVKQANWGDNYNRRFPQSRIGVKSLFEEAFNEALAYEKALADFDRLRSSQQRKQV
APKPNYRLEAVAEVLRGDRQVHIHSYVQSEILMFLRLAEAYKFKVGTFTHILEGYKVAEE
MAKHGTYASTFSDWWAYKFEVYDAIPQNTCLMHNKGVLTSINSDDYEMQRRLNQEAAKSM
MYCDMSPTDAWNMVTINPAKQLGIDQLTGSLEEGKQADLVLWSDSPLSVYAKVENTWVGG
RRYFDRQQDKQAQHEVELERAALIQAVLTRDKPEVPGETPEEKSEPQWHCDTHYNAWGTA
LSEHKAMNQNSAKQSSAHNHAFMEAF