Protein Info for Shew_2567 in Shewanella loihica PV-4

Annotation: MORN repeat-containing protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 327 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF07661: MORN_2" amino acids 77 to 98 (22 residues), 10.8 bits, see alignment (E = 2.8e-05) amino acids 102 to 122 (21 residues), 10.5 bits, see alignment (E = 3.5e-05) amino acids 222 to 241 (20 residues), 10.2 bits, see alignment (E = 4.1e-05) amino acids 294 to 310 (17 residues), 11.4 bits, see alignment (E = 1.7e-05)

Best Hits

KEGG orthology group: None (inferred from 100% identity to slo:Shew_2567)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A3QG35 at UniProt or InterPro

Protein Sequence (327 amino acids)

>Shew_2567 MORN repeat-containing protein (RefSeq) (Shewanella loihica PV-4)
MKAKGLLVGLMLIALSAVGLSVNMGAFTKDYADFESLEKIDGRLHLRGEVEPYSGKVKFF
GDDGWLKQQAMLSQGKLNGELQDFYESGAVQAITHYVDGQITGVTRVYLEDGTLNKEIPY
QDGLKQGTEKHYGFEGGLLSESIEYRQGKRNGWSTSYWDPGRLRNRIHYVDDLRDGLWQQ
YSFGKVVIEGTMVEDKEEGEWRTYFQDTDILQGIAHFKAGQLHGEVTEFYQNGAKECIEY
YAAGSKVGTWTRFYDDSSLEQVKNYRNDKLEGSYREYFRGGLLAEEGQYRDGEKVGIWRR
FSPDGQLLSEHEEQRVRLEADIAVSEE