Protein Info for Shew_2538 in Shewanella loihica PV-4

Annotation: AzlC family protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 245 transmembrane" amino acids 21 to 47 (27 residues), see Phobius details amino acids 61 to 92 (32 residues), see Phobius details amino acids 112 to 130 (19 residues), see Phobius details amino acids 141 to 164 (24 residues), see Phobius details amino acids 171 to 190 (20 residues), see Phobius details amino acids 196 to 216 (21 residues), see Phobius details amino acids 218 to 225 (8 residues), see Phobius details PF03591: AzlC" amino acids 30 to 167 (138 residues), 134.7 bits, see alignment E=1.5e-43

Best Hits

KEGG orthology group: None (inferred from 100% identity to slo:Shew_2538)

Predicted SEED Role

"FIG006238: AzlC family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A3QG06 at UniProt or InterPro

Protein Sequence (245 amino acids)

>Shew_2538 AzlC family protein (RefSeq) (Shewanella loihica PV-4)
MLDNESLGNERIGNASPMRAALKGALAISPLTLAVVPWGILAGSFAIDAGLTPLQSQAMS
ALVFAGAAQLVALGMIKAGIGLASILITTLLITSRHLLYGMAMRPQISPLPLRWRLTLGF
LLTDELFAIANLGKQRSLDPWFAFGGGFSFYLGWNLATAMGITLGHKIENLDALGLDFAI
AATFIAIVVPAVKRPSILVCVLVAMVASVVCALMELQAGLLIASLTGMACGQLYAKLSGE
SWRQA