Protein Info for Shew_2440 in Shewanella loihica PV-4

Annotation: acriflavin resistance protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1084 transmembrane" amino acids 23 to 49 (27 residues), see Phobius details amino acids 365 to 383 (19 residues), see Phobius details amino acids 390 to 411 (22 residues), see Phobius details amino acids 417 to 439 (23 residues), see Phobius details amino acids 462 to 486 (25 residues), see Phobius details amino acids 495 to 517 (23 residues), see Phobius details amino acids 561 to 584 (24 residues), see Phobius details amino acids 919 to 938 (20 residues), see Phobius details amino acids 943 to 965 (23 residues), see Phobius details amino acids 971 to 994 (24 residues), see Phobius details amino acids 1017 to 1035 (19 residues), see Phobius details amino acids 1042 to 1068 (27 residues), see Phobius details PF00873: ACR_tran" amino acids 32 to 1069 (1038 residues), 489.8 bits, see alignment E=1.5e-150

Best Hits

KEGG orthology group: None (inferred from 100% identity to slo:Shew_2440)

Predicted SEED Role

"Acriflavin resistance protein" in subsystem Multidrug Resistance Efflux Pumps

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A3QFQ8 at UniProt or InterPro

Protein Sequence (1084 amino acids)

>Shew_2440 acriflavin resistance protein (RefSeq) (Shewanella loihica PV-4)
MNQQDRHQDNQQSPKRLGFSGRLAAMFQLSAITPLLALLGLLLGLFAVMVTPKEEEPQID
VTFADIYIPFPGATPSEVEHLVTQPMEEVISQIKGIDTLYSFSQPDGALIIAIFEVGIPR
NEAIVKLYNQVYSNKDKVASQAGVGEPQIKPRGIDDVPIVSLTLWSKDKAQSAEQLTHIA
KGLESELKRIPGTREIYSVGSHEISLNVRIDPAKMSFYGLTYDDINRSLSSNNHVSMPVS
LVQDNQEIKVQTGQFLKSKQEVEQLVVAVYQDESGQSAPVYLGDIAKISLNSDIPTQHAW
HGDKSAIYPAVTIAIGKQPGENAVDIANVILERLDKIDNILVPDDVNITVSRNYGKTAGD
KANTLILKLVFATSAVVILVFLTMGLRESVVVGIAIIITLAITLFASWAWGFTLNRISLF
ALIFSIGILVDDAIVVVENIHRHMALGKRSFVELIPVAVDEVGGPTILATFTVIAALMPM
AFVSGLMGPYMSPIPINASMGMLISLAIAFIVTPWLATKLLKGHQHQGGDGEHDVDDRML
RLFTRLISPFVRGKQAGKARIGLGAAIALLIMIAVSLPVGQLVVLKMLPFDNKSEFQVML
DMPEGTPVEQTQRVLKALAMELDKVEEVDNYQLYAGTAAPMNFNGLVRHYFLRQSQELGD
IQVNLVDKGDRDRDSHSIASEVRRALQATAKQYHANVKVVEVPPGPPVWSPILAEVYGPN
AEMRETAANALQQLFHDTQDVVDIDIYLPAAQQKWQVNIDRAKASLMGVPYSNIVDLVAT
SVGGKAVSYLHKPNQKSPVPIKLQLEEGAKVDLEQVLNLRLTNASGNSVPVSELITIHKR
AIDAPIIRKNMIPMIMVVADMAGPLDSPLYGMFEIAGSINQEGGLGFDQHYVNQPSGLDS
IAVLWDGEWKITYETFRDMGIAYGVGMIAIYLLVVGQFRSYSVPLIIMAPIPLTIIGVMP
GHALLGAQFTATSMIGMIALAGIIVRNSILLVDFINQETAAGVPFEQAVIHSGAVRAKPI
MLTGLAAMIGALFILDDPIFNGLAISLIFGILVSTLLTLVVIPVLYYAVMRHRPEYFAAV
NPQS