Protein Info for Shew_2432 in Shewanella loihica PV-4

Annotation: hypothetical protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 546 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details transmembrane" amino acids 404 to 424 (21 residues), see Phobius details PF13584: BatD" amino acids 29 to 120 (92 residues), 53.9 bits, see alignment E=1.2e-18

Best Hits

KEGG orthology group: None (inferred from 100% identity to slo:Shew_2432)

Predicted SEED Role

"BatD"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A3QFQ0 at UniProt or InterPro

Protein Sequence (546 amino acids)

>Shew_2432 hypothetical protein (RefSeq) (Shewanella loihica PV-4)
MVIRRFLTLACLALSLSAPAYALTKVETSVDRNPAIQGEYLVLSIKADDDVDNASLDTSG
LLKDFIVGRTSVSRSTQIMNFDASKETRWQILLAPKQTGTVIIPAMTIDNISSEPIELKV
AAPGSQPEQMKNLFIRSSVSTETAYVGQLITYKVKLYLGVELQRGVLSAPNVEGAQLKQL
GDDVDGTEIIDGRRYRVIERTYSLIADEPGTLSLSGASFSGDVLVESSRRGGMFSFNESR
PMQAKAAPSEIEVLPIPAGYQGDWLVSDLVVLKEDWKKDAQYQVGVPITRNISLLASNAD
DTSLPGISLSLPDTFKVYPEKPQRKTYVRDKQVVAQLNQTTAIVPTQPGSYTLPAIRIPW
WNSRTQKQEFATLPARNISIAPASASQESPQIAAVSPQGNSNGLWPAISALFALLWLATS
LLWYRHYQAYRYRAAPSGADEGATSNAPKATDALRQFETACRNGKTGDALVTLQRHMSQQ
AGMPMTLTDIAALSYDLDQAIQAIQRQGYSQDGQGLEVEKVITAVKNAPKAAPHSTQSAL
RPLNPL