Protein Info for Shew_2400 in Shewanella loihica PV-4

Annotation: hypothetical protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 309 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details PF01370: Epimerase" amino acids 3 to 229 (227 residues), 73.4 bits, see alignment E=1.9e-24 TIGR01777: TIGR01777 family protein" amino acids 3 to 300 (298 residues), 332.2 bits, see alignment E=1.7e-103 PF08338: DUF1731" amino acids 257 to 303 (47 residues), 66.5 bits, see alignment 1.4e-22

Best Hits

KEGG orthology group: K07071, (no description) (inferred from 100% identity to slo:Shew_2400)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A3QFL8 at UniProt or InterPro

Protein Sequence (309 amino acids)

>Shew_2400 hypothetical protein (RefSeq) (Shewanella loihica PV-4)
MRILITGGTGFIGKALVKALEGEHQLTLLTRSAGKAHLTLGNQHKLLGNLSALANLDGFD
AVINLAGEPIADKRWSLEVKQKICDSRWDTTARLAKLFEASKTPPKVFISGSAIGIYGDH
DKQVHLDESFDLAHFKDTGKEEKFPHSVCAKWEELALQCQGLTRVCVMRIGLVLGLNGGA
LKKMLLPFKLGAGGVVGSGKQGMSWIHREDLIAIILFLLNNEQCQGIYNATAPNPVSNRE
FTNSLGTALSRPTLLPMPAPILSLALGEMSQLLLEGQYVYPDRLTQAGFSFHYTHLDDAL
TNLFGASKS