Protein Info for Shew_2381 in Shewanella loihica PV-4

Annotation: RDD domain-containing protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 414 transmembrane" amino acids 68 to 94 (27 residues), see Phobius details amino acids 108 to 127 (20 residues), see Phobius details amino acids 305 to 326 (22 residues), see Phobius details amino acids 357 to 376 (20 residues), see Phobius details PF06271: RDD" amino acids 311 to 388 (78 residues), 51.1 bits, see alignment E=9.3e-18

Best Hits

KEGG orthology group: None (inferred from 100% identity to slo:Shew_2381)

Predicted SEED Role

"FIG01057717: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A3QFJ9 at UniProt or InterPro

Protein Sequence (414 amino acids)

>Shew_2381 RDD domain-containing protein (RefSeq) (Shewanella loihica PV-4)
MPSTAHQSASPDSAKKSKTKAPNSKDRKTKDPKSKDPKTIVTPFAFHVAPELLYTPLASP
LKRGLAMLIDGLLISVLAEQAGALFILLVGLTLVIERRSHQLGKALKWGLYLAMLLMTIW
VTSDNIISYGDADKGKDGEKVAQTTGQQAESLNALKVMPQIIALSLCEEASCADEKLTKL
LSAMDSLEASDREKVALASQLIDELSLPSQEKQALMQRLKQAYPNGFAVKQGEVKQDAVK
PEALQQEALKQETVKQSTVEQEASESSQQALMDEPAALGIDPDKLDEEEDKPSPYSLLEW
AKGILNDLGLGFGWAAFYFTIFTAWFDGQTLGKKLLNIRVVPLDASSISLWDAFGRYGGY
GAGFATGLLGFLQIYWDANRQAIQDKISETVVVDLSKPREIPAEESSPEVYGGA