Protein Info for Shew_2289 in Shewanella loihica PV-4

Annotation: glycosy hydrolase family protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1069 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details PF03442: CBM_X2" amino acids 337 to 416 (80 residues), 44.9 bits, see alignment 1e-15 PF08305: NPCBM" amino acids 794 to 926 (133 residues), 154.8 bits, see alignment E=1.4e-49 amino acids 931 to 1064 (134 residues), 160.7 bits, see alignment E=2.1e-51

Best Hits

KEGG orthology group: None (inferred from 100% identity to slo:Shew_2289)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A3QFA7 at UniProt or InterPro

Protein Sequence (1069 amino acids)

>Shew_2289 glycosy hydrolase family protein (RefSeq) (Shewanella loihica PV-4)
MKITPRPCVTLTLAIGLALGTLPKAGLADGLIRDPRIRPDTQITVSSSDPQLDLAIARSV
DYIYDYLVVGPQQYPTTEEAARITKFRDAGVPAVPSLWGSYHGTPTANATGYRENFCLRD
VAHQTEGAALLSLNEENIDMLTRFAFDALQDKRVEVSDPNLDPLDPWASARPKSFWQEYW
TLWSYNFYGAPYYMDAGFQELPAPLELLEKVYRMYRFTGDERWLSQTFMDYGEQLLNEFA
SRYDFNGNGIVDNRGNEGILPTLWEFEGASHIGDNELSFSLSADQQGGSLIIDKGYFARL
HVQDMSLKVRFRNGRDDYLRVRINNLTSATGEAPILSNDYLFIENTQPTQDLLLSFNRAP
GVTLTKLTDGKTPLVPGSDYSISGNQVVISKSYLDRIIGNSSYRYKFSFGFQFSDASQAR
LVVESGSHSYADAILSQRSVTLDWNNLQDVNLTLDFSQTPTENRDLYRIENNMNRVVEAG
DTLGVQYQAILAYEQMLRAKAQLVNDSQEAATLIAKADQYRASAQSLLSDFQTRWYDDKQ
MTYARAFDGYGNAIFGWGHENSFFMPMKDLLEPGAKADAYLSFIHDNSESLNEEAKTYLP
EAFFNYGQNDRGWYWMQAGLKRFFADRGDDQVIKTYPEIAFTNVSNLVTHMMGFEPNVPQ
HSISTLSRLPASLGHVEVANLPLGQSLMQTGDYHREIDSLLTLRHDSQHSTTLSRSAGSG
EPLTWRAQFIGSYPSLYVDGQALTASQASINGVTISYVDLDLNGGQSIVVSTSEDGTEPP
VEPPVEPPVAWTPLIDLTPVSQQSDWGSINLNKSVDGNPLRVGGQQYDNGIGTHASGEII
YDLQGQYQGFTALVGVDDEVGSNGSVRFKVYLDNQLAFDSGVKTGIDAASALDLDVVGVS
QLRLVIEDGGDGINSDHADWLQPRLTRKVTVPLTSLTPLSASTGWGNMQYDRSIEGNPLT
LGGQTFATGIGTHSTSELVYDLKGLYSDFEAKVGVDDETGSNGSVAFEIYLDGQLAYDSG
ALLGSDSPHAIAVDVSGAQQMRLVTTDGGDNINFDHADWAVPVLIQNGH