Protein Info for Shew_2209 in Shewanella loihica PV-4

Annotation: peptidase S8 and S53, subtilisin, kexin, sedolisin (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1158 signal peptide" amino acids 1 to 31 (31 residues), see Phobius details PF00082: Peptidase_S8" amino acids 157 to 418 (262 residues), 189.3 bits, see alignment E=2e-59 PF01483: P_proprotein" amino acids 585 to 666 (82 residues), 52.6 bits, see alignment 8.1e-18 amino acids 800 to 881 (82 residues), 49.4 bits, see alignment 8.1e-17 PF18911: PKD_4" amino acids 989 to 1068 (80 residues), 73 bits, see alignment 3.4e-24 PF00801: PKD" amino acids 1003 to 1059 (57 residues), 53.7 bits, see alignment 3e-18

Best Hits

KEGG orthology group: None (inferred from 100% identity to slo:Shew_2209)

Predicted SEED Role

"Serine protease, subtilase family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A3QF27 at UniProt or InterPro

Protein Sequence (1158 amino acids)

>Shew_2209 peptidase S8 and S53, subtilisin, kexin, sedolisin (RefSeq) (Shewanella loihica PV-4)
MTTPKKSSSKLLTTLLGASLLTGLSPVALAVTKAPLKAMPQYDNQSVLVKFKQKVTKKDR
KALTRNLGVSFKDKNNDGVDDRLRNIANGRLAVLDLGQGRQVEAVLNSLKNHPLVEYAEP
NYIVHTTAVPNDTSYASLYGMQKIQAETAWDYVIGDSSVVVGVIDTGFDFNHPDLADNIW
TNPNEIAGNGIDDDGNGYIDDIHGISAILDNGNPSDTGAHGTHVSGTIGAKGNNALGVVG
VNWQTNMVGCSFLGTGGGTLADGVQCIDYMIGLKNAGNNVRVLNNSWGGGGFTQTLKDAI
SAANNADILFVAAAGNDSADIDNGGFYPAGYDVPNVVAVASTDSADNLSGFSNYGDQLVH
LAAPGSFILSTTPNNSYDTFSGTSMATPHVAGAAALILAGNPNLTTSQLKSVLMNTGDAL
TALQGKTISGKRLNLANALIDSGGAGPSFFMEATPTKSTVNQGDSQAYAIDLVAAGGFNG
TATMSLSSVPELNADVVFAQNPVAGDTTNTMTINTTEQTAPGTYNMTVNATDGSVSKNIN
LELKVWPQGTVSTMLTSNQVVPISDNDPSFPATSSINVPYDMTLTQVEVFVDITHAWAPD
MLVSVISPAGEEVILHDRAGGNGTGLVGNFIPTEYELDNALGEWTLKVVDEVAGDTGAIN
SWSLKLTGAPSAGTDFVPNVQIATPANQGAYLTGETVSFSASSNDTEDGDLTSGIVWTSS
IDGVIGNGASFTKSNLSVGDHVITATSTDSAGQASTETVELSVADANTTVSGANSTAIAM
PEMGGKVFTEIDLPTGVAIDAIEVNVDISFESVQYLNVWLQSPSGTLVKLVTWRQFWNKD
LVKTFNPVEFAGESSMGTWRLFVEDTSSYIMNGVLNNWSISVSNGDAVLPPPAENTAPEL
TITAPTGGTSFNLGDSITFEGSAIDAEEGNISSRIDWYSNLNGKIGTGGLFSTNSLSVGD
HIVTAVAWDNDEAFDQKQVSLTVVDAPANEAPVADFSFAAEFLNVQFSDLSGDTDGAVTT
HSWDFGDGASSTLANPSHSYAAAGTYTVTLTVSDDDGAEHSVTKEVTVTEPSIVLEGSAS
SDGSRVVASLSWTSKNKVNFDVYRDGALVSSGVRKTSYTDRFSSNATSFTYQVCETGTST
CSLEETIVATPKTKGRNK