Protein Info for Shew_2184 in Shewanella loihica PV-4

Annotation: septum site-determining protein MinC (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 221 TIGR01222: septum site-determining protein MinC" amino acids 6 to 219 (214 residues), 211.7 bits, see alignment E=6e-67 PF05209: MinC_N" amino acids 6 to 75 (70 residues), 57.9 bits, see alignment E=8.6e-20 PF03775: MinC_C" amino acids 116 to 216 (101 residues), 108.8 bits, see alignment E=1.3e-35

Best Hits

Swiss-Prot: 100% identical to MINC_SHELP: Probable septum site-determining protein MinC (minC) from Shewanella loihica (strain ATCC BAA-1088 / PV-4)

KEGG orthology group: K03610, septum site-determining protein MinC (inferred from 100% identity to slo:Shew_2184)

Predicted SEED Role

"Septum site-determining protein MinC" in subsystem Bacterial Cell Division or Bacterial Cytoskeleton

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A3QF02 at UniProt or InterPro

Protein Sequence (221 amino acids)

>Shew_2184 septum site-determining protein MinC (RefSeq) (Shewanella loihica PV-4)
MQKPSLELKGSSFTLSVLHINDADLDGVARELDDKLAIAPQFFLGAPLVVNLSAISDPDY
NLAGLKDLLISRQLVIVGITGAPSAIANQAKALGLALIKSGKQSQTQPQLPKTTKIVKQN
IRSGQQIYAQNGDLIIIGAVGNGAEVIADGSIHIYGSLRGKAMAGANGDKNAVIIAQNID
AELVSIAGQYWLTENLQAHASIKSGCIRLDGDSLTVEALSL