Protein Info for Shew_2166 in Shewanella loihica PV-4

Annotation: hypothetical protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1307 signal peptide" amino acids 1 to 37 (37 residues), see Phobius details PF11739: DctA-YdbH" amino acids 1078 to 1301 (224 residues), 196.5 bits, see alignment E=2.2e-62

Best Hits

KEGG orthology group: None (inferred from 98% identity to slo:Shew_2166)

Predicted SEED Role

"Putative uncharacterized protein ydbH"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A3QEY4 at UniProt or InterPro

Protein Sequence (1307 amino acids)

>Shew_2166 hypothetical protein (RefSeq) (Shewanella loihica PV-4)
MSRRFFTSRSIKWIAGAMAMSLLLLLLLLVLVASQLEYLVKRLANPYLANAGISIESLRL
SSSDLMALKLPMAKLKVDGNLVRLDDLELTLAEDWLSAPMGLTQIDSLSVRRAEVSLSQD
YFDNLGREQASGASSALNLGALPQIALGEVSFNLLGKQASSLKTQPLGLKLDYLNLDNQG
QLTGALSFYQAPLLSLAATLEKTRWQIDSRLEFEPLGRLIGELSMLTSAGQSEPKPDTSP
AHQASNVSEASGVSEAPSLSKAPALVTALQDVNQRLTEIFTLSGSLSSRGELDLIKGVLH
SSHEFDWLKIQLKRLGGQTLSPELSITVTGQAQAKQESAYLTQSSHAQSSYSRSIQAQSS
QSMILGLNGPLNDLHLTLSPTLVTSSTTLEQLGELAGESESIAALLTALKAQSLDEQAHD
KQVHDKQAPDMRAPNQRSADEHTTKLSLVLGQEMNGEDALDFSLQDGDLQLGALTAKVET
QGLVLAAKLKKARLEKARLEETRLEKDPESKPTSAWQLTGNWQLDAALKQPLCLTLPPYP
QTGTGCQDRPKNKTDIDNRLTLAKANLQLEGELDAKQADATDDSTNDSQKNSTLNLTLAG
ELNLAQPEFNHRDLKVGASQITTEIPAPLNLSLEKGPELKLNLDWQGLKVAINGHHLSWP
AIQEMANKEPKAQLTSEQTRTSFGAGHFTFSPGRPLLVELASFMSVTHSPRLTLPQASMA
EISITDASRTERAAKPLERELTASEFVLEAAEPLRLDAQALVLPPVGLKVIALAASEQKA
VQGKGQEQAQAQVKTTQVKTTQVKTTRVNLDELSLATQSIALTPKATKTDTITGTESAAA
KLSQSTLSQSTLSLSPDALLAFPWQSEANYQLTNLKVSEESVRLNKLRRKTLIKLPSASL
SQSLHWQGALQTSGSSGTKSYSGPVSEPSKILIQLAGDSNGHYGLTTKEKWNLDGLPFYS
EHHLGLTQSLKPRLLTGELTLESDANELMKRLMRMQGASLENPLIGDINLTSQHSLNWLG
DKMDFAFALIPEVKLSEGSYNALPFEQAEFTGQCQLDGVKAPNSQTAKLACEPLSLKVAA
FNPGVLITDINAHAKLELDLTQGETEAATGAQTGAQTGAELALSGADVKLDARANTLGGE
ILLPIFNLNLGAPSSAYLVLQGLDLEQLLAAQPQTGIYADGIFDGVLPVQLEHGQVSITN
GQLAARAPGGLIKVDDNPAVLQMRLSQPYLDFAFSALEELHYTQLSSSFDMAPNGDALLK
VQVKGRAKDIERPIHLNYAQEENMLQLLKSLQIGDRLQSEIERAMAN