Protein Info for Shew_2149 in Shewanella loihica PV-4

Annotation: ABC transporter (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 286 transmembrane" amino acids 40 to 59 (20 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 100% identity to slo:Shew_2149)

Predicted SEED Role

"FIG01058884: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A3QEW7 at UniProt or InterPro

Protein Sequence (286 amino acids)

>Shew_2149 ABC transporter (RefSeq) (Shewanella loihica PV-4)
MRTGGFNLSINSANRQALLSTPLLPVPPLPVKLWPATLRRVHLLCVFIFIATLLCVVSAP
KAETLKLSSLNWPPYSGPTLKDGGACVVVARAALAAMGHELQVDYFPWSRTVRVVTRDDS
GYQGYFPEYHHPTDKFIFSDSMGQSPLGILEQSQHPITWSRVQDLNAYTLGVVRDYVNTQ
ALDEMIAIGAQPVELVSSDEHNIRKVATGRVQGAVMDLYVYQFLIEQPHLSELKTRLQFN
KQLLESKQLYIAFRNTPDGRRWREIYNAGLARIQVEQLLEDYLQSL