Protein Info for Shew_2078 in Shewanella loihica PV-4

Annotation: hypothetical protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 248 TIGR01033: DNA-binding regulatory protein, YebC/PmpR family" amino acids 1 to 238 (238 residues), 342.6 bits, see alignment E=6.9e-107 PF20772: TACO1_YebC_N" amino acids 5 to 76 (72 residues), 121.9 bits, see alignment E=1.2e-39 PF01709: Transcrip_reg" amino acids 83 to 237 (155 residues), 207 bits, see alignment E=1.4e-65

Best Hits

Swiss-Prot: 85% identical to Y2432_SHEON: Probable transcriptional regulatory protein SO_2432 (SO_2432) from Shewanella oneidensis (strain MR-1)

KEGG orthology group: None (inferred from 100% identity to slo:Shew_2078)

Predicted SEED Role

"FIG000859: hypothetical protein YebC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A3QEP6 at UniProt or InterPro

Protein Sequence (248 amino acids)

>Shew_2078 hypothetical protein (RefSeq) (Shewanella loihica PV-4)
MAGHSKWANIKHRKAAQDAKRGKLFTKFIRELTVAAREGGSDPDSNPRLRAAIDKALSNN
MTRDTVERAIKRGAGELDGQVLETIMYEGYGPGGTAVMVETMTDNRNRTVSGVRNAFSKS
GGNLGTDGSVAYLFEKRGVISYAEGSDEDTIMDAALDAGAEDVVTNDDTSIDVYTTPEAF
GTVKDALDAAGLDAVNAEVTMVPSTKAELDAETAPKFLRLIDNLEDHDDVQEVYHNAEIS
DEILASLE