Protein Info for Shew_2011 in Shewanella loihica PV-4

Annotation: acriflavin resistance protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1060 transmembrane" amino acids 12 to 34 (23 residues), see Phobius details amino acids 342 to 364 (23 residues), see Phobius details amino acids 380 to 402 (23 residues), see Phobius details amino acids 433 to 453 (21 residues), see Phobius details amino acids 465 to 484 (20 residues), see Phobius details amino acids 543 to 565 (23 residues), see Phobius details amino acids 879 to 897 (19 residues), see Phobius details amino acids 904 to 924 (21 residues), see Phobius details amino acids 931 to 955 (25 residues), see Phobius details amino acids 976 to 995 (20 residues), see Phobius details amino acids 1007 to 1032 (26 residues), see Phobius details PF00873: ACR_tran" amino acids 8 to 1033 (1026 residues), 475.5 bits, see alignment E=1.6e-146

Best Hits

KEGG orthology group: None (inferred from 100% identity to slo:Shew_2011)

Predicted SEED Role

"Acriflavin resistance protein" in subsystem Multidrug Resistance Efflux Pumps

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A3QEH9 at UniProt or InterPro

Protein Sequence (1060 amino acids)

>Shew_2011 acriflavin resistance protein (RefSeq) (Shewanella loihica PV-4)
MPDPNKGMIAWFARNSVAANLLMIIIIIGGLLTASTIRKQFFPQTETNWVEFSAFYPGAA
PQEVEEGITIKVEEALERVQGLKRVITYSNRNSASGYFRIEDSYDPQVVLDEIKSEIDSI
SSFPDGMERPRVERIKNRQEVFYISLYGDLPPKKLKEFGEKIHDELMQLPLVNITEFYGG
LDYEMSIEVSKDKLREYNLSFNDVAKAVRGYSRNMSAGQIKAENGYISLRVQNQAYVGYE
FENLPLITLEDGTKLLLGDVANVVDGFEEGIQYSKFNGKNSVTFFVGASNDQSMTDVAKV
VNQYVEDKQASLPQGLNLETWVDMTYYLQGRLDLMLDSMKSGAILVFIMLALFLRVRLAF
WVMMGLPVCFLGTLLLMPTAMIDVTINVISLFAFILVLGIVVDDAIVMGESAHTECEEKG
QSIDNVIRGVKKVAMPATFGVLTTIAAFLPITMDDGPSSAFGQSIGYVVILCLLFSLVES
KLILPAHLAKMKHKTQVKPGSKNPINLLRIGVNYLQAKVDNGLQFVIYRLYKPSLTLSVK
YRYMIIALFISLILVCAGLYSGGILRYVGQPKIPHDFPRISVEMNLDSSEQATLSAALAI
EAALHKVDDQLEQEFGQRMIADMQVDLQGRTRAQVMTKLVTPELRPIDTFALAERWRAAM
PQIPGVKSFNIQDNLFGGGRDDGDISFRLEGKDEAQLIAAAKALKAKLNSLQGVGDVNDS
RQSSAKEVQFSLKPLANSVGLTLADVASQVSASFYGLEAQRILRNGEEIKVMLRYPEEQR
NSIAHVTEVMILTTQGAEIPLSEVAEIQVTQGVSGIRRENGNRTINVWASVDASQAEPFK
LAQDIRDNFIPELLRQYPRVKSEVAGNIQEQIDSANTQMRNFIISLLVIYSLLAVPLKSY
VQPMMIMSVIPFGIIGSVLGHMLLGIDLSALSLFGIIAAAGVVVNDSLVMVDYINRARLA
GISMKVAVIEAGCRRFRAILLTSLTTFIGLVPIMSETSMQAQMVIPMAVSLAFGVLFATI
VTLVLIPCLYVAIEDTKSAFSWIYNRIAGVKVNQPVVSEQ